# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh00988.fasta.huge -Q ../query/KIAA0418.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0418, 989 aa vs ./tmplib.23147 library 1986516 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.8433+/-0.00939; mu= -11.5204+/- 0.637 mean_var=358.1991+/-85.997, 0's: 0 Z-trim: 6 B-trim: 16 in 1/39 Lambda= 0.067766 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1295 ( 550 res) fg01760 ( 550) 400 53.4 9.1e-08 >>KIAA1295 ( 550 res) fg01760 (550 aa) initn: 603 init1: 346 opt: 400 Z-score: 231.3 bits: 53.4 E(): 9.1e-08 Smith-Waterman score: 593; 27.247% identity (49.929% similar) in 701 aa overlap (298-988:1-549) 270 280 290 300 310 320 KIAA04 IAPQRAQISSPNLRTRPPPRRESSLGFQLPKPPEPPSVEVEYYTIAEFQSCISDGISFRG ::: ::.:: :::::::::. : :::::.. KIAA12 KPPIPPQVEEEYYTIAEFQTTIPDGISFQA 10 20 30 330 340 350 360 370 380 KIAA04 GQKAEVIDKNSGGWWYVQIGEKEGWAPASYIDKRKKPNLSRRTSTLTRPKVPPPAPPSKP : :.:::.:: .::::.:: .:::::::..::: :: ::. .::. : : . KIAA12 GLKVEVIEKNLSGWWYIQIEDKEGWAPATFIDKYKK------TSNASRPNFLAPLP-HEV 40 50 60 70 80 390 400 410 420 430 440 KIAA04 KEAEEGPTGASESQDSPRKLKYEEPEYDIPAFGFDSEPELSEE-----PVEDRASGERRP . . : ..: :.. . . .: : : .:: :.. : .::.. KIAA12 TQLRLGEAAALENNTGSEATGPSRPLPDAPHGVMDSGLPWSKDWKGSKDVLRKASSDMSA 90 100 110 120 130 140 450 460 470 480 490 500 KIAA04 AQPHRPSPASSLQRARFKVGESSEDVALEEETIYENEGFRPYAEDTLSARGSSGDSDSPG . .. .... . .. .:.. : . : : : .:. :: . :: KIAA12 SAGYEEISDPDMEE-KPSLPPRKESIIKSEGELLERERERQRTEQL---RGPT--PKPPG 150 160 170 180 190 510 520 530 540 550 560 KIAA04 SSSLSLTRKNSPKSGSPKSSSLLKLKAEKNAQAEMGKNHSSASFSSSITINTTCCSSSSS . :. : . ..: . : .:. .. :: . . .. . . .. KIAA12 VILPMMPAKHIPPA---RDSRRPEPKPDKSRLFQL-KNDMGLECGHKVLAKEV----KKP 200 210 220 230 240 570 580 590 600 610 620 KIAA04 SSSSLSKTSGDLKPRSASDAGIRGTPKVRAKKDADANAGLTSCPRAKPSVRPKPFLNRAE . .::.. :: :. :: ::. : : : :...: .: : . KIAA12 NLRPISKSKTDL-PEEKPDA----TPQ---------NPFLKSRPQVRP--KPAPSPKTEP 250 260 270 280 290 630 640 650 660 670 680 KIAA04 SQSQEKMDISTLRRQLRPTGQLRGGLKGSKSEDSELPPQTASEAPSEGSRRSSSDLITLP :.....:: .:: .::: .::.:. : .:: . ... ... KIAA12 PQGEDQVDICNLRSKLRP----------AKSQDKSL-------LDGEGPQAVGGQDVAFS 300 310 320 330 690 700 710 720 730 740 KIAA04 ATTPPCPTKKEWEGPATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELE . : :::. ..:: : :. . KIAA12 RSFLPG------EGPG----------RAQD------------------------RTGKQD 340 350 750 760 770 780 790 800 KIAA04 GWAPSHYLVLDENEQPDPSGKELDTVPAKGRQNEGKSDSLEKIERRVQALNTVNQSKKAT : .:.. .. : :. : : : .:: . :. . :.. .. KIAA12 GLSPKE---ISCRAPPRPA-KTTDPV--------SKSVPVP--------LQEAPQQRPVV 360 370 380 390 810 820 830 840 850 KIAA04 PPIPSKPPGGFGKTS-GTPAVK---MRNGVRQVAVRPQSVFVSPPPKDNNLSCALRRNES :: :: ...: : :. .. ..: : ... :: :: .: KIAA12 PPRRPPPPKKTSSSSRPLPEVRGPQCEGHESRAAPTPGRALLVPPKAKPFLS------NS 400 410 420 430 440 450 860 870 880 890 900 910 KIAA04 LTATDGLRGVRRNSSFSTARSAAAEAKGRLAERAASQGSDSPLLPAQRNSIPVSPVRPKP : . : :: . ..:.. :. :.::. :.: . KIAA12 LGGQDDTRGKGSLGPWGTGKI------GENREKAAAA------------SVPNA------ 460 470 480 920 930 940 950 960 970 KIAA04 IEKSQFIHNNLKD-VYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFK ..::: .::..::.:::..:..::::. .:: :.: .:::.::.:.:. .. KIAA12 --------DGLKDSLYVAVADFEGDKDTSSFQEGTVFEVREKNSSGWWFCQVLSGAPSWE 490 500 510 520 530 980 KIAA04 GWVPSNYLEKKN ::.:::::.:: KIAA12 GWIPSNYLRKKP 540 550 989 residues in 1 query sequences 1986516 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:48 2008 done: Thu Dec 18 15:20:49 2008 Total Scan time: 0.680 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]