HUGE

Gene/Protein Characteristic Table for KIAA0419

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK01085
Accession No. :	AB007879
Description :	Centrosomal protein of 110 kDa.
HUGO Gene Name :
Clone Name :	hh01019 [Vector Info]
Flexi ORF Clone :	pF1KA0419
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5399 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2132 bp

Genome contig ID gi51511732f_19342779
PolyA signal sequence
(AATAAA,-21)
+----*----+----*----+----*----+----
TAGGCAAAAAGCAAAATAAACTTTTCATCTTAAAG
Flanking genome sequence
(129450 - 129499)
----+----*----+----*----+----*----+----*----+----*
AAAATCTAGTTTGATTGTTTTTATTTACCAGGGGAAGGACTATTAAGAAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 16 f 19442779 19472227 15 99.3 Perfect prediction

Features of the protein sequence	Description

Length: 1000 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAG11187	100.0	centrosomal pro...	synthetic construct
AAH36654	99.8	CP110 protein [...	Homo sapiens
CAH18111	98.2	hypothetical pr...	Homo sapiens
O43303	98.1	Centrosomal pro...	Homo sapiens
BAG62153	98.1	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: CAGTACCATTTGAGCCATTCG

Primer_r
: AGAACAGTATCAGCACACAGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 16

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CAGTACCATTTGAGCCATTCG
Primer_r	: AGAACAGTATCAGCACACAGC
PCR product length	: 104 (1.6k) bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2132 bp
Genome contig ID	gi51511732f_19342779
PolyA signal sequence (AATAAA,-21)	+--------+--------+----*----+---- TAGGCAAAAAGCAAAATAAACTTTTCATCTTAAAG
Flanking genome sequence (129450 - 129499)	----+--------+--------+--------+--------+----* AAAATCTAGTTTGATTGTTTTTATTTACCAGGGGAAGGACTATTAAGAAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	16	f	19442779	19472227	15	99.3	Perfect prediction

Gene/Protein Characteristic Table for KIAA0419

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information