hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02340782/chunk_1/iprscan-20080502-02340782.nocrc
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Query sequence: KIAA0422
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00044                                                 399.7   1.7e-115   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00044    1/2     378   577 ..     1   231 []   234.5  8.7e-66
SM00044    2/2     931  1139 ..     1   231 []   165.2  6.7e-45

Alignments of top-scoring domains:
SM00044: domain 1 of 2, from 378 to 577: score 234.5, E = 8.7e-66
                   *->eekkktdrLLyqlLPasvAeslkegr.........epvpaesydsVT
                       e+++ +rLL ++LP++vA+++ke  ++++++   ++++++ +d+V+
    KIAA0422   378    HENRQQERLLLSVLPQHVAMEMKEDIntkkedmmfHKIYIQKHDNVS 424  

                   ilFsDIvgFTslcsastPeqvvtlLndlysrFDriidrhggsrvvvYKVe
                   ilF+DI+gFTsl+s++t++++v+ Ln+l+ rFD++ ++++     +  ++
    KIAA0422   425 ILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENH-----CLRIK 469  

                   TiGDaYMVvsGlPeeaetsaesklkddglteawcfavqhaeliadeaLdm
                    +GD+Y++vsGlPe++                     +ha+++++++ dm
    KIAA0422   470 ILGDCYYCVSGLPEARA--------------------DHAHCCVEMGVDM 499  

                   veslktvkvphrkgelpgeglrvRiGiHtGpVvaGVvGlrmpRYclFGdT
                   +e++  v      +e++g ++++R+GiH+G+V +GV Glr++  +++ ++
    KIAA0422   500 IEAISLV------REVTGVNVNMRVGIHSGRVHCGVLGLRKWQFDVWSND 543  

                   VNlASRmEStgdpgqIqvSeetyslLqlgqaerrekggfefee<-*
                   V+lA+ mE+ g +g+I+++ +t + L         +g++e+e+   
    KIAA0422   544 VTLANHMEAGGRAGRIHITRATLQYL---------NGDYEVEP    577  

SM00044: domain 2 of 2, from 931 to 1139: score 165.2, E = 6.7e-45
                   *->eekkktdrLLyqlLPasvAeslkegr...epvpaesydsVTilFsDI
                      e +  + rLL+++LP++vA +  + ++++++ + +s ++V+++F+ I
    KIAA0422   931    ELQAYNRRLLHNILPKDVAAHFLARErrnDELYYQSCECVAVMFASI 977  

                   vgFTslc....sastPeqvvtlLndlysrFDriidrhggsrvvvYKVeTi
                    +F++++ + ++ ++  +  +lLn++   FD+ii++   +    +K++Ti
    KIAA0422   978 ANFSEFYveleANNEGVECLRLLNEIIADFDEIISEERFRQ--LEKIKTI 1025 

                   GDaYMVvsGlPeeaetsaesklkddglteawcfavqhaeliadeaLdmve
                   G +YM++sGl  ++                +     h+   ad a+  +e
    KIAA0422  1026 GSTYMAASGLNASTY---------------DQVGRSHITALADYAMRLME 1060 

                   slktvkvphrkgelpgeglrvRiGiHtGpVvaGVvGlrmpRYclFGdTVN
                    +k+ +++h+     ++++++ iG++ GpVvaGV+G+r+p Y+++G+TVN
    KIAA0422  1061 QMKH-INEHS-----FNNFQMKIGLNMGPVVAGVIGARKPQYDIWGNTVN 1104 

                   lASRmEStgdpgqIqvSeetyslLqlgqaerrekggfefee<-*
                   + SRm Stg+p++Iqv+ + y++L        + ++ e+ +   
    KIAA0422  1105 VSSRMDSTGVPDRIQVTTDLYQVL------AAKGYQLECRG    1139 

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