HUGE

Gene/Protein Characteristic Table for KIAA0431

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00075
Accession No. :	AB007891
Description :
HUGO Gene Name :	ATM interactor (ATMIN)
Clone Name :	hh01739 [Vector Info]
Flexi ORF Clone :	pF1KA0431
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5350 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2383 bp

Genome contig ID gi51511732f_79531631
PolyA signal sequence
(GATAAA,-21)
+----*----+----*----+----*----+----
TTTGAAAGCCATATGATAAAATGATTTTATTTAAT
Flanking genome sequence
(106823 - 106872)
----+----*----+----*----+----*----+----*----+----*
AATACCCAGTTATTTTCATTGTTTTTTCTTTTGTTCATGAAAATATGCTA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 16 f 79631631 79638452 3 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 719 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW95550	100.0	ATM/ATR-Substra...	Homo sapiens
AAH02701	100.0	ATMIN protein [...	Homo sapiens
O43313	100.0	ATM interactor;...	Homo sapiens
XP_001108829	97.1	similar to ATM/...	Macaca mulatta
BAF83632	99.7	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: AGGGTACAATTCTGGCTTCTC

Primer_r
: TAAATGGCAGTGATCTATGGC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 16

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AGGGTACAATTCTGGCTTCTC
Primer_r	: TAAATGGCAGTGATCTATGGC
PCR product length	: 191 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2383 bp
Genome contig ID	gi51511732f_79531631
PolyA signal sequence (GATAAA,-21)	+--------+--------+----*----+---- TTTGAAAGCCATATGATAAAATGATTTTATTTAAT
Flanking genome sequence (106823 - 106872)	----+--------+--------+--------+--------+----* AATACCCAGTTATTTTCATTGTTTTTTCTTTTGTTCATGAAAATATGCTA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	16	f	79631631	79638452	3	99.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0431

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information