hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02504939/chunk_1/iprscan-20080502-02504939.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0432 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00249.21.ls Myb-like DNA-binding domain 87.6 3.5e-23 2 PF00249.21.fs Myb-like DNA-binding domain 84.2 3.6e-22 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00249.21.fs 1/2 33 79 .. 1 65 [] 48.2 3.4e-12 PF00249.21.ls 1/2 33 79 .. 1 65 [] 49.9 7.8e-12 PF00249.21.fs 2/2 85 129 .. 1 65 [] 36.0 6.9e-09 PF00249.21.ls 2/2 85 129 .. 1 65 [] 37.7 3.8e-08 Alignments of top-scoring domains: PF00249.21.fs: domain 1 of 2, from 33 to 79: score 48.2, E = 3.4e-12 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn +g+W Ede+l++av+k+Gk+ +W++Ia +l KIAA0432 33 GGVWRNTEDEILKAAVMKYGKN----------QWSRIASLLH----- 64 nvlgrtaeqcklryykyk<-* +++a+qck r+y ++ KIAA0432 65 ---RKSAKQCKARWYEWL 79 PF00249.21.ls: domain 1 of 2, from 33 to 79: score 49.9, E = 7.8e-12 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn +g+W Ede+l++av+k+Gk+ +W++Ia +l KIAA0432 33 GGVWRNTEDEILKAAVMKYGKN----------QWSRIASLLH----- 64 nvlgrtaeqcklryykyk<-* +++a+qck r+y ++ KIAA0432 65 ---RKSAKQCKARWYEWL 79 PF00249.21.fs: domain 2 of 2, from 85 to 129: score 36.0, E = 6.9e-09 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn + +W+ eE+e+l+++ ++++++ W++Ia +g KIAA0432 85 KTEWSREEEEKLLHLAKLMPTQ-----------WRTIAPIIG----- 115 nvlgrtaeqcklryykyk<-* rta qc ++y ++ KIAA0432 116 ----RTAAQCLEHYEFLL 129 PF00249.21.ls: domain 2 of 2, from 85 to 129: score 37.7, E = 3.8e-08 *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn + +W+ eE+e+l+++ ++++++ W++Ia +g KIAA0432 85 KTEWSREEEEKLLHLAKLMPTQ-----------WRTIAPIIG----- 115 nvlgrtaeqcklryykyk<-* rta qc ++y ++ KIAA0432 116 ----RTAAQCLEHYEFLL 129 //