hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03104087/chunk_1/iprscan-20080502-03104087.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0444 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08074.2.ls CHDCT2 (NUC038) domain 446.0 4.7e-131 1 PF08074.2.fs CHDCT2 (NUC038) domain 444.0 1.8e-130 1 PF06461.2.ls Domain of Unknown Function (DUF1086) 306.1 5.8e-89 1 PF06461.2.fs Domain of Unknown Function (DUF1086) 304.2 2.1e-88 1 PF00271.21.fs Helicase conserved C-terminal domain 99.7 1.7e-28 1 PF06465.4.fs Domain of Unknown Function (DUF1087) 98.0 6.2e-28 1 PF00271.21.ls Helicase conserved C-terminal domain 101.7 2e-27 1 PF06465.4.ls Domain of Unknown Function (DUF1087) 100.0 6.4e-27 1 PF00176.13.fs SNF2 family N-terminal domain 26.5 5e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00176.13.fs 1/1 5 23 .. 336 355 .] 26.5 5e-07 PF00271.21.ls 1/1 83 162 .. 1 76 [] 101.7 2e-27 PF00271.21.fs 1/1 83 162 .. 1 76 [] 99.7 1.7e-28 PF06465.4.fs 1/1 319 383 .. 1 67 [] 98.0 6.2e-28 PF06465.4.ls 1/1 319 383 .. 1 67 [] 100.0 6.4e-27 PF06461.2.ls 1/1 396 555 .. 1 168 [] 306.1 5.8e-89 PF06461.2.fs 1/1 396 555 .. 1 168 [] 304.2 2.1e-88 PF08074.2.fs 1/1 754 927 .. 1 180 [] 444.0 1.8e-130 PF08074.2.ls 1/1 754 927 .. 1 180 [] 446.0 4.7e-131 Alignments of top-scoring domains: PF00176.13.fs: domain 1 of 1, from 5 to 23: score 26.5, E = 5e-07 *->rllnlimqLrKicNfHPyLf<-* +lln++m L+K+cN HPyLf KIAA0444 5 SLLNIMMDLKKCCN-HPYLF 23 PF00271.21.ls: domain 1 of 1, from 83 to 162: score 101.7, E = 2e-27 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr +l+++g+k+ r++Gg++ R+e++++F++ ++ ++L++T+++g+ KIAA0444 83 FLeYEGYKYERIDGGITGGLRQEAIDRFNAPGAqqfCFLLSTRAGGL 129 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi++ +++VI+yd++wnp ++iQ+ Ra+R+G KIAA0444 130 GINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 162 PF00271.21.fs: domain 1 of 1, from 83 to 162: score 99.7, E = 1.7e-28 *->ll.epgikvarlhGglsqeeReeilekFrngks...kvLvaTdvagr +l+++g+k+ r++Gg++ R+e++++F++ ++ ++L++T+++g+ KIAA0444 83 FLeYEGYKYERIDGGITGGLRQEAIDRFNAPGAqqfCFLLSTRAGGL 129 GiDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* Gi++ +++VI+yd++wnp ++iQ+ Ra+R+G KIAA0444 130 GINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 162 PF06465.4.fs: domain 1 of 1, from 319 to 383: score 98.0, E = 6.2e-28 *->leqllkecElaitesiilakenaepsYWekLLrasyEkqQeeelsqL ++++ E++++e+i+++ en +p+YWekLLr++yE+qQe+++++L KIAA0444 319 VREEDGV-EEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQEDLARNL 363 GKRKRsRKQViYtEgttvee<-* GK+KR+RKQV+Y++ ++++ KIAA0444 364 GKGKRIRKQVNYNDASQEDQ 383 PF06465.4.ls: domain 1 of 1, from 319 to 383: score 100.0, E = 6.4e-27 *->leqllkecElaitesiilakenaepsYWekLLrasyEkqQeeelsqL ++++ E++++e+i+++ en +p+YWekLLr++yE+qQe+++++L KIAA0444 319 VREEDGV-EEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQEDLARNL 363 GKRKRsRKQViYtEgttvee<-* GK+KR+RKQV+Y++ ++++ KIAA0444 364 GKGKRIRKQVNYNDASQEDQ 383 PF06461.2.ls: domain 1 of 1, from 396 to 555: score 306.1, E = 5.8e-89 *->peaargLeeddeDyqrkp..rTvtRPYRkraRdnseekliPLmegeG ++ ++ e++deD++++p+++ ++R R+ +++++l+PL++++G KIAA0444 396 YSIGS--EDEDEDFEERPegQSGRRQSRRQLKSDRDKPLPPLLARVG 440 ryleVLGFNetqRdiFlrtvMRyGmPPQdnfdskwlVrdLrnKsekefkr +++eVLGFN++qR++Fl+++MR+GmPPQd+f+s wlVrdLr+Ksekef++ KIAA0444 441 GNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRA 490 YgiLFLkHiaEnptDNsttFKVITAmVYaDGVPkEGlssdevLvritlmm Y++LF++H++E+++D+++tF aDGVP+EGls+++vL+ri++m+ KIAA0444 491 YVSLFMRHLCEPGADGAETF--------ADGVPREGLSRQHVLTRIGVMS 532 LVkeKvqflenhpgaPvfpeyvi<-* LV++Kvq++e+++g+ + p+++ KIAA0444 533 LVRKKVQEFEHVNGKYSTPDLIP 555 PF06461.2.fs: domain 1 of 1, from 396 to 555: score 304.2, E = 2.1e-88 *->peaargLeeddeDyqrkp..rTvtRPYRkraRdnseekliPLmegeG ++ ++ e++deD++++p+++ ++R R+ +++++l+PL++++G KIAA0444 396 YSIGS--EDEDEDFEERPegQSGRRQSRRQLKSDRDKPLPPLLARVG 440 ryleVLGFNetqRdiFlrtvMRyGmPPQdnfdskwlVrdLrnKsekefkr +++eVLGFN++qR++Fl+++MR+GmPPQd+f+s wlVrdLr+Ksekef++ KIAA0444 441 GNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRA 490 YgiLFLkHiaEnptDNsttFKVITAmVYaDGVPkEGlssdevLvritlmm Y++LF++H++E+++D+++tF aDGVP+EGls+++vL+ri++m+ KIAA0444 491 YVSLFMRHLCEPGADGAETF--------ADGVPREGLSRQHVLTRIGVMS 532 LVkeKvqflenhpgaPvfpeyvi<-* LV++Kvq++e+++g+ + p+++ KIAA0444 533 LVRKKVQEFEHVNGKYSTPDLIP 555 PF08074.2.fs: domain 1 of 1, from 754 to 927: score 444.0, E = 1.8e-130 *->GkEYEIWhRRHDYWLLAgvvvhGYGRyQiNFqDIiNDprFsivNEPF Gk Y IWhRRHDYWLLAg+v+hGY R+Q DI+NDpr+ i+NEPF KIAA0444 754 GKIYDIWHRRHDYWLLAGIVTHGYARWQ----DIQNDPRYMILNEPF 796 KevgaePaanfadiKnKFLaRRFKLlEQsLVIEEQLRRAAhlNkaqdPdq K + + +n+++ KnKFLaRRFKLlEQ+LVIEEQLRRAA+lN qdP + KIAA0444 797 KSEVHK--GNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNH 844 PvgsLaqrFaelEnlAeshaniakESsaGNrnANAvLHKvLaQLdelLSD P++ L++r ae+E+lAesh++++kES+aGN++ANAvLHKvL+QL+elLSD KIAA0444 845 PAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSD 894 mKsDVsRLPaTlaqvapVteRLqMsERqILSRL<-* mK+DV RLP+ l++++pV+ RLqMsER+ILSRL KIAA0444 895 MKADVTRLPSMLSRIPPVAARLQMSERSILSRL 927 PF08074.2.ls: domain 1 of 1, from 754 to 927: score 446.0, E = 4.7e-131 *->GkEYEIWhRRHDYWLLAgvvvhGYGRyQiNFqDIiNDprFsivNEPF Gk Y IWhRRHDYWLLAg+v+hGY R+Q DI+NDpr+ i+NEPF KIAA0444 754 GKIYDIWHRRHDYWLLAGIVTHGYARWQ----DIQNDPRYMILNEPF 796 KevgaePaanfadiKnKFLaRRFKLlEQsLVIEEQLRRAAhlNkaqdPdq K + + +n+++ KnKFLaRRFKLlEQ+LVIEEQLRRAA+lN qdP + KIAA0444 797 KSEVHK--GNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNH 844 PvgsLaqrFaelEnlAeshaniakESsaGNrnANAvLHKvLaQLdelLSD P++ L++r ae+E+lAesh++++kES+aGN++ANAvLHKvL+QL+elLSD KIAA0444 845 PAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSD 894 mKsDVsRLPaTlaqvapVteRLqMsERqILSRL<-* mK+DV RLP+ l++++pV+ RLqMsER+ILSRL KIAA0444 895 MKADVTRLPSMLSRIPPVAARLQMSERSILSRL 927 //