# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fk03072.fasta.huge -Q ../query/KIAA0446.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0446, 351 aa
 vs ./tmplib.23147 library

1987154 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.9705+/-0.00408; mu= 15.9587+/- 0.278
 mean_var=62.3319+/-14.509, 0's: 0 Z-trim: 1  B-trim: 7 in 1/39
 Lambda= 0.162450

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1896  ( 568 res)   fk06388                     ( 568)  208 57.5 1.9e-09


>>KIAA1896  ( 568 res)   fk06388                          (568 aa)
 initn: 172 init1: 106 opt: 208  Z-score: 261.3  bits: 57.5 E(): 1.9e-09
Smith-Waterman score: 324;  23.279% identity (55.082% similar) in 305 aa overlap (41-337:286-560)

               20        30        40        50        60        70
KIAA04 WSSPQTRWSRRSLRRSSGTMEDKRNIQIIEWEHLDKKKFYVFGVAMTMMIRVSVYPFTLI
                                     :.::      : : .   . :. . :.  .
KIAA18 YWKHSTIFDVGENLTVPDEFTVEERQTGMWWRHL------VAGGGAGAVSRTCTAPLDRL
         260       270       280             290       300         

               80        90       100       110        120         
KIAA04 RTRLQVQKGKSLYHGTFDAFIKILRADGITGLYRGFLVNTFTLISGQCY-VTTYELTRKF
       .. .::. ..:   :   .: ...:  :  .:.::  .:.. .   .     .::  ...
KIAA18 KVLMQVHASRSNNMGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRL
     310       320       330       340       350       360         

     130        140       150       160       170       180        
KIAA04 VADYSQSNTV-KSLVAGGSASLVAQSITVPIDVVSQHLMMQRKGEKMGRFQVRGNPEGQG
       :.. ...  . . ::::. :. .:::   :..:.. .. ... :.  : .          
KIAA18 VGSDQETLRIHERLVAGSLAGAIAQSSIYPMEVLKTRMALRKTGQYSGML----------
     370       380       390       400       410                   

      190       200       210       220       230       240        
KIAA04 VVAFGQTKDIIRQILQADGLRGFYRGYVASLLTYIPNSAVWWPFYHFYAAIVFPWIPEQL
               :  :.::  .:. .::.::: ..:  :: ...    :.        :. .  
KIAA18 --------DCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNA---WLQH--
             420       430       440       450       460           

      250       260       270       280           290         300  
KIAA04 SYLCPKECPHIVFQAVSGPLAAATASILTNPMDVIRTRVQ----VEGKNSIILT--FRQL
        :   .  : .    . : .... ... . :. ..:::.:    .::   . ..  :...
KIAA18 -YAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRMQAQASIEGAPEVTMSSLFKHI
         470       480       490       500       510       520     

            310       320       330       340       350 
KIAA04 MAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSLRPELVDSRHW
       .  :: .::..::.  .... :.. .  : ::.::              
KIAA18 LRTEGAFGLYRGLAPNFMKVIPAVSISYVVYENLKITLGVQSR      
         530       540       550       560              




351 residues in 1 query   sequences
1987154 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:58 2008 done: Thu Dec 18 15:21:58 2008
 Total Scan time:  0.360 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]