hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03135981/chunk_1/iprscan-20080502-03135981.nocrc
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Query sequence: KIAA0446
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00153.17.fs Mitochondrial carrier protein                 198.7    3.2e-58   3
PF00153.17.ls Mitochondrial carrier protein                 202.2    1.1e-57   3

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00153.17.fs   1/3      48   134 ..     1   100 []    75.0  1.2e-21
PF00153.17.ls   1/3      48   134 ..     1   100 []    76.9  5.9e-20
PF00153.17.fs   2/3     137   233 ..     1    89 [.    59.2  5.6e-17
PF00153.17.ls   2/3     137   244 ..     1   100 []    59.0  1.5e-14
PF00153.17.fs   3/3     258   344 ..     1   100 []    64.5  1.6e-18
PF00153.17.ls   3/3     258   344 ..     1   100 []    66.4  8.7e-17

Alignments of top-scoring domains:
PF00153.17.fs: domain 1 of 3, from 48 to 134: score 75.0, E = 1.2e-21
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      +f++    G +  ++ ++ +yP+ +++tRLQ          ++g++ 
    KIAA0446    48    KFYV---FGVAMTMMIRVSVYPFTLIRTRLQ---------VQKGKSL 82   

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   Y+g++d+f+ki++ +Gi gLY+G+l+n +   +++ +y +tYE ++k+  
    KIAA0446    83 YHGTFDAFIKILRADGITGLYRGFLVNTF-TLISGQCYVTTYELTRKFVA 131  

                   kkk<-*
                   +++   
    KIAA0446   132 DYS    134  

PF00153.17.ls: domain 1 of 3, from 48 to 134: score 76.9, E = 5.9e-20
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      +f++    G +  ++ ++ +yP+ +++tRLQ          ++g++ 
    KIAA0446    48    KFYV---FGVAMTMMIRVSVYPFTLIRTRLQ---------VQKGKSL 82   

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   Y+g++d+f+ki++ +Gi gLY+G+l+n +   +++ +y +tYE ++k+  
    KIAA0446    83 YHGTFDAFIKILRADGITGLYRGFLVNTF-TLISGQCYVTTYELTRKFVA 131  

                   kkk<-*
                   +++   
    KIAA0446   132 DYS    134  

PF00153.17.fs: domain 2 of 3, from 137 to 233: score 59.2, E = 5.6e-17
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQ.............sta
                      ++++sl+aGg A ++a+++t P+Dvv   L+ ++++++ ++ + + +
    KIAA0446   137    NTVKSLVAGGSASLVAQSITVPIDVVSQHLMmqrkgekmgrfqvRGN 183  

                   vadassaaggsrkYkgildcfkkiykeEGirgLYkGllpnllrvaPyaai
                   + ++ + a g+     + d +++i++ +G+rg+Y+G +++ll ++P++a+
    KIAA0446   184 PEGQGVVAFGQ-----TKDIIRQILQADGLRGFYRGYVASLLTYIPNSAV 228  

                   yFgtY<-*
                   ++ +Y   
    KIAA0446   229 WWPFY    233  

PF00153.17.ls: domain 2 of 3, from 137 to 244: score 59.0, E = 1.5e-14
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQ.............sta
                      ++++sl+aGg A ++a+++t P+Dvv   L+ ++++++ ++ + + +
    KIAA0446   137    NTVKSLVAGGSASLVAQSITVPIDVVSQHLMmqrkgekmgrfqvRGN 183  

                   vadassaaggsrkYkgildcfkkiykeEGirgLYkGllpnllrvaPyaai
                   + ++ + a g+     + d +++i++ +G+rg+Y+G +++ll ++P++a+
    KIAA0446   184 PEGQGVVAFGQ-----TKDIIRQILQADGLRGFYRGYVASLLTYIPNSAV 228  

                   yFgtYEtlKklllkkk<-*
                   ++ +Y ++  + +      
    KIAA0446   229 WWPFYHFYAAIVFPWI    244  

PF00153.17.fs: domain 3 of 3, from 258 to 344: score 64.5, E = 1.6e-18
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      +++ ++++G +A+a+a+++t+P+Dv++tR Q                
    KIAA0446   258    HIVFQAVSGPLAAATASILTNPMDVIRTRVQ-------------VEG 291  

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   +++i+ +f+++++eEG+ gL kGl+++++ + P++ +  ++YE+lKkl l
    KIAA0446   292 KNSIILTFRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSL 341  

                   kkk<-*
                   + +   
    KIAA0446   342 RPE    344  

PF00153.17.ls: domain 3 of 3, from 258 to 344: score 66.4, E = 8.7e-17
                   *->sflasllaGgiAGaiaatvtyPlDvvKtRLQstavadassaaggsrk
                      +++ ++++G +A+a+a+++t+P+Dv++tR Q                
    KIAA0446   258    HIVFQAVSGPLAAATASILTNPMDVIRTRVQ-------------VEG 291  

                   YkgildcfkkiykeEGirgLYkGllpnllrvaPyaaiyFgtYEtlKklll
                   +++i+ +f+++++eEG+ gL kGl+++++ + P++ +  ++YE+lKkl l
    KIAA0446   292 KNSIILTFRQLMAEEGPWGLMKGLSARIISATPSTIVIVVGYESLKKLSL 341  

                   kkk<-*
                   + +   
    KIAA0446   342 RPE    344  

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