hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03185453/chunk_1/iprscan-20080502-03185453.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0449 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00225.13.ls Kinesin motor domain 526.9 2e-155 1 PF00225.13.fs Kinesin motor domain 525.2 6.6e-155 1 PF00400.22.ls WD domain, G-beta repeat 191.5 1.9e-54 7 PF00400.22.fs WD domain, G-beta repeat 177.9 2.3e-50 7 PF06696.2.ls Streptococcal surface antigen repeat 29.6 1e-05 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00225.13.ls 1/1 18 375 .. 1 424 [] 526.9 2e-155 PF00225.13.fs 1/1 18 375 .. 1 424 [] 525.2 6.6e-155 PF00400.22.fs 1/7 1289 1325 .. 1 38 [] 30.1 1.7e-07 PF00400.22.ls 1/7 1289 1325 .. 1 38 [] 32.0 1.9e-06 PF00400.22.fs 2/7 1329 1366 .. 1 38 [] 21.7 3.7e-05 PF00400.22.ls 2/7 1329 1366 .. 1 38 [] 23.7 0.00062 PF00400.22.fs 3/7 1393 1430 .. 1 38 [] 15.2 0.0026 PF00400.22.ls 4/7 1434 1475 .. 1 38 [] 28.3 2.6e-05 PF00400.22.fs 4/7 1434 1475 .. 1 38 [] 26.3 2e-06 PF00400.22.ls 5/7 1485 1521 .. 1 38 [] 23.4 0.00073 PF00400.22.fs 5/7 1485 1521 .. 1 38 [] 21.5 4.3e-05 PF00400.22.ls 6/7 1526 1564 .. 1 38 [] 33.2 8.6e-07 PF00400.22.fs 6/7 1526 1564 .. 1 38 [] 31.2 8.1e-08 PF00400.22.ls 7/7 1568 1604 .. 1 38 [] 33.9 5.4e-07 PF00400.22.fs 7/7 1568 1604 .. 1 38 [] 31.9 5e-08 Alignments of top-scoring domains: PF00225.13.ls: domain 1 of 1, from 18 to 375: score 526.9, E = 2e-155 *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe R+RP +++Ek +g++++ +++ + ++ gk+k Ft+D VFd + KIAA0449 18 RIRPQLSKEKIEGCHICT---SVTPGEPQVLlGKDKAFTYDFVFDLD 61 atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe + qe++y ++++ l+e ++eGyN+t++AYGQTG+GKTYTM+ KIAA0449 62 TW---------QEQIYSTCVSKLIEGCFEGYNATVLAYGQTGAGKTYTMG 102 Gstdsdks.spnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKP +++ t eee GiiPRa+ +lF i+erk r KIAA0449 103 -------TgFDMA-----TSEEEQGIIPRAIAHLFGGIAERK-R------ 133 klnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIYNEk + e+g+ + ef+v++++lE+YNE+ KIAA0449 134 RAQEQGVA----------------------G---PEFKVSAQFLELYNEE 158 irDLLspsppqrgspskdnekkkkk..pLrireDpkrGgkmdgvyVkGLt i DL ++++ ++++++ +++++i+eD ++G +y +G+t KIAA0449 159 ILDLFDSTR---------DPDTRHRrsNIKIHEDANGG-----IYTTGVT 194 eveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdt + ++s ee++++L++G+ +Rt+asT+mN +SSRSHaiFti++ q + +t KIAA0449 195 SRLIHSQEELIQCLKQGALSRTTASTQMNVQSSRSHAIFTIHLCQMRMCT 244 tgsvvtgkd........nsgeesvrvskLnLVDLAGSERaskTgatgAgg + + v++ ++ +++++ s+e ++++k+++VDLAGSER+++Tg A+g KIAA0449 245 QPDLVNEAVtglpdgtpPSSEYETLTAKFHFVDLAGSERLKRTG---ATG 291 rRLkEaanINkSLsaLGnVInALadnq.kssHiPYRDSKLTrLLQDSLGG +R kE+ +IN L+aLGnVI+AL+d+++k H+PYRDSKLTrLLQDSLGG KIAA0449 292 ERAKEGISINCGLLALGNVISALGDQSkKVVHVPYRDSKLTRLLQDSLGG 341 GDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* Ns+T+MIa++SPs+ +++ETL+TL++A+RA+nIk KIAA0449 342 --NSQTIMIACVSPSDR----DFMETLNTLKYANRARNIK 375 PF00225.13.fs: domain 1 of 1, from 18 to 375: score 525.2, E = 6.6e-155 *->RvRPlnerEksrgssdvvnvsedvessvitn.gkektFtFDkVFdpe R+RP +++Ek +g++++ +++ + ++ gk+k Ft+D VFd + KIAA0449 18 RIRPQLSKEKIEGCHICT---SVTPGEPQVLlGKDKAFTYDFVFDLD 61 atQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGKTYTMe + qe++y ++++ l+e ++eGyN+t++AYGQTG+GKTYTM+ KIAA0449 62 TW---------QEQIYSTCVSKLIEGCFEGYNATVLAYGQTGAGKTYTMG 102 Gstdsdks.spnpsdsCttpeeepGiiPRaledlFerieerkerkpvfKP +++ t eee GiiPRa+ +lF i+erk r KIAA0449 103 -------TgFDMA-----TSEEEQGIIPRAIAHLFGGIAERK-R------ 133 klnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEIYNEk + e+g+ + ef+v++++lE+YNE+ KIAA0449 134 RAQEQGVA----------------------G---PEFKVSAQFLELYNEE 158 irDLLspsppqrgspskdnekkkkk..pLrireDpkrGgkmdgvyVkGLt i DL ++++ ++++++ +++++i+eD ++G +y +G+t KIAA0449 159 ILDLFDSTR---------DPDTRHRrsNIKIHEDANGG-----IYTTGVT 194 eveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrntdt + ++s ee++++L++G+ +Rt+asT+mN +SSRSHaiFti++ q + +t KIAA0449 195 SRLIHSQEELIQCLKQGALSRTTASTQMNVQSSRSHAIFTIHLCQMRMCT 244 tgsvvtgkd........nsgeesvrvskLnLVDLAGSERaskTgatgAgg + + v++ ++ +++++ s+e ++++k+++VDLAGSER+++Tg A+g KIAA0449 245 QPDLVNEAVtglpdgtpPSSEYETLTAKFHFVDLAGSERLKRTG---ATG 291 rRLkEaanINkSLsaLGnVInALadnq.kssHiPYRDSKLTrLLQDSLGG +R kE+ +IN L+aLGnVI+AL+d+++k H+PYRDSKLTrLLQDSLGG KIAA0449 292 ERAKEGISINCGLLALGNVISALGDQSkKVVHVPYRDSKLTRLLQDSLGG 341 GDNsKTlMIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-* Ns+T+MIa++SPs+ +++ETL+TL++A+RA+nIk KIAA0449 342 --NSQTIMIACVSPSDR----DFMETLNTLKYANRARNIK 375 PF00400.22.fs: domain 1 of 7, from 1289 to 1325: score 30.1, E = 1.7e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c++ +gHt+++ c++ + ll++gS D+++k+W+ KIAA0449 1289 LQCVsMAeGHTKPILCLDATDE---LLFTGSKDRSCKMWN 1325 PF00400.22.ls: domain 1 of 7, from 1289 to 1325: score 32.0, E = 1.9e-06 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +c++ +gHt+++ c++ + ll++gS D+++k+W+ KIAA0449 1289 LQCVsMAeGHTKPILCLDATDE---LLFTGSKDRSCKMWN 1325 PF00400.22.fs: domain 2 of 7, from 1329 to 1366: score 21.7, E = 3.7e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ + l+gH + V +++++ + + l++s S ik+Wd KIAA0449 1329 GQEIaALkGHPNNVVSIKYCSH-SGLVFSVST-SYIKVWD 1366 PF00400.22.ls: domain 2 of 7, from 1329 to 1366: score 23.7, E = 0.00062 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g+ + l+gH + V +++++ + + l++s S ik+Wd KIAA0449 1329 GQEIaALkGHPNNVVSIKYCSH-SGLVFSVST-SYIKVWD 1366 PF00400.22.fs: domain 3 of 7, from 1393 to 1430: score 15.2, E = 0.0026 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* + + ++ ++ +a sp+ g++l +S + ++iW+ KIAA0449 1393 STRAiTSaQGEHQINQIALSPS-GTMLYAASG-NAVRIWE 1430 PF00400.22.ls: domain 4 of 7, from 1434 to 1475: score 28.3, E = 2.6e-05 *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-* ++++ l+gH ++V+c+ + + +++ l+++gS D+ +k+++ KIAA0449 1434 FQPVgKLtGHIGPVMCLTVTQTasQHDLVVTGSKDHYVKMFE 1475 PF00400.22.fs: domain 4 of 7, from 1434 to 1475: score 26.3, E = 2e-06 *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-* ++++ l+gH ++V+c+ + + +++ l+++gS D+ +k+++ KIAA0449 1434 FQPVgKLtGHIGPVMCLTVTQTasQHDLVVTGSKDHYVKMFE 1475 PF00400.22.ls: domain 5 of 7, from 1485 to 1521: score 23.4, E = 0.00073 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g + + H ++++c+a+ d +l+sgSrD+ ik Wd KIAA0449 1485 GPTHnFEpPHYDGIECLAIQGD---ILFSGSRDNGIKKWD 1521 PF00400.22.fs: domain 5 of 7, from 1485 to 1521: score 21.5, E = 4.3e-05 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* g + + H ++++c+a+ d +l+sgSrD+ ik Wd KIAA0449 1485 GPTHnFEpPHYDGIECLAIQGD---ILFSGSRDNGIKKWD 1521 PF00400.22.ls: domain 6 of 7, from 1526 to 1564: score 33.2, E = 8.6e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++ ++H+++V+++af p +p+l+s++r g ik+W+ KIAA0449 1526 ELIQqIPnAHKDWVCALAFIPG-RPMLLSACRAGVIKVWN 1564 PF00400.22.fs: domain 6 of 7, from 1526 to 1564: score 31.2, E = 8.1e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++ ++H+++V+++af p +p+l+s++r g ik+W+ KIAA0449 1526 ELIQqIPnAHKDWVCALAFIPG-RPMLLSACRAGVIKVWN 1564 PF00400.22.ls: domain 7 of 7, from 1568 to 1604: score 33.9, E = 5.4e-07 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++++gH s++++++ + +++++S+D+ +k+W+ KIAA0449 1568 FTPIgEIkGHDSPINAICTNAK---HIFTASSDCRVKLWN 1604 PF00400.22.fs: domain 7 of 7, from 1568 to 1604: score 31.9, E = 5e-08 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* +++++++gH s++++++ + +++++S+D+ +k+W+ KIAA0449 1568 FTPIgEIkGHDSPINAICTNAK---HIFTASSDCRVKLWN 1604 //