hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03185453/chunk_1/iprscan-20080502-03185453.nocrc
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Query sequence: KIAA0449
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00129                                                 541.8   2.8e-158   1
SM00320                                                 193.6    1.9e-53   7

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00129     1/1      10   382 ..     1   404 []   541.8 2.8e-158
SM00320     1/7    1288  1325 ..     1    46 []    32.9  4.2e-05
SM00320     2/7    1328  1366 ..     1    46 []    27.7   0.0016
SM00320     3/7    1393  1430 ..     1    46 []    16.6      1.2
SM00320     4/7    1433  1475 ..     1    46 []    25.4   0.0077
SM00320     5/7    1483  1521 ..     1    46 []    22.0    0.083
SM00320     6/7    1524  1564 ..     1    46 []    34.7  1.2e-05
SM00320     7/7    1567  1604 ..     1    46 []    34.2  1.8e-05

Alignments of top-scoring domains:
SM00129: domain 1 of 1, from 10 to 382: score 541.8, E = 2.8e-158
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtv.....tvtvn..
                       + ++VavR+   RP++ +Ek e+    ++ + +v++++++v + ++
    KIAA0449    10    DCCVKVAVRI---RPQLSKEKIEG----CHICTSVtpgepQVLLGkd 49   

                   ..FtFDkVFWrydvddpsasQedVFeevaaPLvdsaldGYNvaTIFAYGQ
                   + Ft+D+VF      d ++ Qe+++ ++++ L++ +++GYN+ T++AYGQ
    KIAA0449    50 kaFTYDFVF------DLDTWQEQIYSTCVSKLIEGCFEGYNA-TVLAYGQ 92   

                   TGSGKTyTMsGtptdpgilsndla.ditpdepGiIPRaledlFekide..
                   TG+GKTyTM+             +  + ++e+GiIPRa+ +lF  i+e++
    KIAA0449    93 TGAGKTYTMGTGF----------DmATSEEEQGIIPRAIAHLFGGIAErk 132  

                   ............fsVkvSylEIYNEkirDLLspspenSksrGkha.kqss
                   ++ ++++  +++f+V++++lE+YNE+i DL +++++        ++++++
    KIAA0449   133 rraqeqgvagpeFKVSAQFLELYNEEILDLFDSTRD--------PdTRHR 174  

                   kkkLrirEdkngnrhdapkLtrlrgqggvyVvGLtevsVsSaeevlelle
                   + + +i+Ed n               gg+y +G+t + ++S ee++++l+
    KIAA0449   175 RSNIKIHEDAN---------------GGIYTTGVTSRLIHSQEELIQCLK 209  

                   rGnknRtvaaTkmNeeSSRSHaiFtitleqkeklepiadek.......te
                   +G+ +Rt+a+T mN +SSRSHaiFti+l q +   +++  ++  ++ +++
    KIAA0449   210 QGALSRTTASTQMNVQSSRSHAIFTIHLCQMRMCTQPDLVNeavtglpDG 259  

                   sstnegteqiksskLnLVDLAGSERaskTgseaeGdRLkEaqnINkSLla
                   +   ++ e ++++k+++VDLAGSER ++Tg  a+G+R+kE+++IN +Lla
    KIAA0449   260 TPPSSEYE-TLTAKFHFVDLAGSERLKRTG--ATGERAKEGISINCGLLA 306  

                   LGnVInALaddshdsaeseatkqaggkssHIPYRDSKLTrLLQdSLGGNs
                   LGnVI+AL+d             +++k  H+PYRDSKLTrLLQdSLGGNs
    KIAA0449   307 LGNVISALGD-------------QSKKVVHVPYRDSKLTRLLQDSLGGNS 343  

                   KTlMIanvSPsssnyeETlsTLrFAsRaksIknkpavne<-*
                    T+MIa+vSPs+ ++ ETl+TL++A+Ra++Iknk++vn+   
    KIAA0449   344 QTIMIACVSPSDRDFMETLNTLKYANRARNIKNKVVVNQ    382  

SM00320: domain 1 of 7, from 1288 to 1325: score 32.9, E = 4.2e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++++  +gHt+  p+++++  +         ll++gs+D+++++W
    KIAA0449  1288    PlQCVSMAEGHTK--PILCLDATDE--------LLFTGSkDRSCKMW 1324 

                   d<-*
                   +   
    KIAA0449  1325 N    1325 

SM00320: domain 2 of 7, from 1328 to 1366: score 27.7, E = 0.0016
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++ ++ lkgH +   V s+++++++       l++s s+   i++W
    KIAA0449  1328    TgQEIAALKGHPN--NVVSIKYCSHS------GLVFSVStSY-IKVW 1365 

                   d<-*
                   d   
    KIAA0449  1366 D    1366 

SM00320: domain 3 of 7, from 1393 to 1430: score 16.6, E = 1.2
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ + + +  ++   ++ +a sp+g      ++l+++s++  +r+W
    KIAA0449  1393    StRAITSAQ-GEH--QINQIALSPSG------TMLYAASgNA-VRIW 1429 

                   d<-*
                   +   
    KIAA0449  1430 E    1430 

SM00320: domain 4 of 7, from 1433 to 1475: score 25.4, E = 0.0077
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +++ +l+gH g  pV ++++ ++    ++ +l+++gs+D+ ++++
    KIAA0449  1433    RfQPVGKLTGHIG--PVMCLTVTQTA---SQHDLVVTGSkDHYVKMF 1474 

                   d<-*
                   +   
    KIAA0449  1475 E    1475 

SM00320: domain 5 of 7, from 1483 to 1521: score 22.0, E = 0.083
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      t  +++ +++ H +  ++ ++a+  d        +l+sgs+D+ i+ 
    KIAA0449  1483    TiGPTHNFEpPHYD--GIECLAIQGD--------ILFSGSrDNGIKK 1519 

                   Wd<-*
                   Wd   
    KIAA0449  1520 WD    1521 

SM00320: domain 6 of 7, from 1524 to 1564: score 34.7, E = 1.2e-05
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      +++l++ ++++H++  +V+++af p         +l+s+++ g i++
    KIAA0449  1524    QqELIQQIPnAHKD--WVCALAFIPGR------PMLLSACrAGVIKV 1562 

                   Wd<-*
                   W+   
    KIAA0449  1563 WN    1564 

SM00320: domain 7 of 7, from 1567 to 1604: score 34.2, E = 1.8e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + +++ ++kgH++  p+++++ +          +++++s+D+ ++lW
    KIAA0449  1567    NfTPIGEIKGHDS--PINAICTNAK--------HIFTASsDCRVKLW 1603 

                   d<-*
                   +   
    KIAA0449  1604 N    1604 

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