hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03352665/chunk_1/iprscan-20080502-03352665.nocrc
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Query sequence: KIAA0458
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00401                                                  66.6    3.2e-15   1
SM00439                                                  58.8      7e-13   1
SM00717                                                  37.5    1.8e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00439    1/1      89   269 ..     1   163 []    58.8    7e-13
SM00717    1/1     378   427 ..     1    53 []    37.5  1.8e-06
SM00401    1/1     487   538 ..     1    54 []    66.6  3.2e-15

Alignments of top-scoring domains:
SM00439: domain 1 of 1, from 89 to 269: score 58.8, E = 7e-13
                   *->etisvGDfVlvepddfknreeKagrnvgdepyyvarIeeifetkkgk
                      + +++GD+V++e+              ++ py+++ I+++ +  +  
    KIAA0458    89    VVYRPGDCVYIESRR------------PNTPYFICSIQDFKLVHNSQ 123  

                   k........................................skkvrvrwf
                      +++++   +++  + +  ++++++ ++ ++++ ++++++    v w+
    KIAA0458   124 AccrsptpalcdppacslpvasqppqhlseagrgpvgskrdHLLMNVKWY 173  

                   yRPedtvlgkarllerepr..............l.kdyafdknEvflsec
                   yR ++++ +  + l ++++++++++++   ++++ k      +E+f s++
    KIAA0458   174 YRQSEVPDSVYQHLVQDRHnendsgrelvitdpViK-----NRELFISDY 218  

                   PceddvpledIigkCnVlklsdyeklrpeesnsdaklerakaEERKkkge
                      d+  + +++gkCn+ ++sd++ +r+ + +                  
    KIAA0458   219 --VDTYHAAALRGKCNISHFSDIFAAREFKAR------------------ 248  

                   edvFfcellYdptkgsFkklp<-*
                    d Ff+ l Y+p+++++++     
    KIAA0458   249 VDSFFYILGYNPETRRLNSTQ    269  

SM00717: domain 1 of 1, from 378 to 427: score 37.5, E = 1.8e-06
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelp.gRtpkqcrer
                        + Wte+E +++++++++yG    +++ +I kel +++   +++ +
    KIAA0458   378    IEKCWTEDEVKRFVKGLRQYG----KNFFRIRKELLpNKETGELITF 420  

                   wrnllkp<-*
                   ++ ++k+   
    KIAA0458   421 YYYWKKT    427  

SM00401: domain 1 of 1, from 487 to 538: score 66.6, E = 3.2e-15
                   *->kgsgrrCsnCgtttTplWRrgpsGnqktLCNACGLyykkhgvkkrpl
                        +g++C +C ttt+++W++g++ n  +LC++C++++kk+g+ ++p+
    KIAA0458   487    ELKGYACRHCFTTTSKDWHHGGREN-ILLCTDCRIHFKKYGE-LPPI 531  

                   slkkdgi<-*
                   +++ d++   
    KIAA0458   532 EKPVDPP    538  

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