hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03370904/chunk_1/iprscan-20080502-03370904.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0459
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02338.9.fs OTU-like cysteine protease                      86.3    7.6e-25   1
PF02338.9.ls OTU-like cysteine protease                      88.0    2.6e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02338.9.fs   1/1     103   215 ..     1   157 []    86.3  7.6e-25
PF02338.9.ls   1/1     103   215 ..     1   157 []    88.0  2.6e-23

Alignments of top-scoring domains:
PF02338.9.fs: domain 1 of 1, from 103 to 215: score 86.3, E = 7.6e-25
                   *->pgDGnCLfravsdqlgldadkdvgdqelheelRemvsglveylrrwe
                      pgDGnCLfra++dql        g++ +h + R+++   v+y++   
    KIAA0459   103    PGDGNCLFRALGDQLE-------GHSRNHLKHRQET---VDYMI--- 136  

                   edelaenredfskfleedsGDspdesfeeYikriskdgaWGgeWySLEni
                        ++redf++f+e+d      ++fe+ ++ + k+g+++g      n 
    KIAA0459   137 -----KQREDFEPFVEDD------IPFEKHVASLAKPGTFAG------ND 169  

                   eiqAlahilrvpIivydlyklqsgritvfieiygkylplnkkkpirlsyl
                   +i A+a   + ++++     +q   + + i+        + k+++r ++ 
    KIAA0459   170 AIVAFARNHQLNVVI-----HQLNAPLWQIR-------GTEKSSVRELHI 207  

                   ghLeglgeHY<-*
                   ++ +  geHY   
    KIAA0459   208 AYRY--GEHY    215  

PF02338.9.ls: domain 1 of 1, from 103 to 215: score 88.0, E = 2.6e-23
                   *->pgDGnCLfravsdqlgldadkdvgdqelheelRemvsglveylrrwe
                      pgDGnCLfra++dql        g++ +h + R+++   v+y++   
    KIAA0459   103    PGDGNCLFRALGDQLE-------GHSRNHLKHRQET---VDYMI--- 136  

                   edelaenredfskfleedsGDspdesfeeYikriskdgaWGgeWySLEni
                        ++redf++f+e+d      ++fe+ ++ + k+g+++g      n 
    KIAA0459   137 -----KQREDFEPFVEDD------IPFEKHVASLAKPGTFAG------ND 169  

                   eiqAlahilrvpIivydlyklqsgritvfieiygkylplnkkkpirlsyl
                   +i A+a   + ++++     +q   + + i+        + k+++r ++ 
    KIAA0459   170 AIVAFARNHQLNVVI-----HQLNAPLWQIR-------GTEKSSVRELHI 207  

                   ghLeglgeHY<-*
                   ++ +  geHY   
    KIAA0459   208 AYRY--GEHY    215  

//