hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-03435779/chunk_1/iprscan-20080502-03435779.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0463 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00630 452.8 1.7e-131 1 SM00429 311.7 5.1e-89 4 SM00423 135.7 4.9e-36 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00630 1/1 119 561 .. 1 532 [] 452.8 1.7e-131 SM00423 1/3 579 629 .. 1 56 [] 55.3 7.9e-12 SM00423 2/3 724 771 .. 1 56 [] 36.6 3.3e-06 SM00423 3/3 872 925 .. 1 56 [] 43.8 2.3e-08 SM00429 1/4 926 1021 .. 1 111 [] 88.8 6.5e-22 SM00429 2/4 1022 1107 .. 1 111 [] 98.9 5.9e-25 SM00429 3/4 1109 1209 .. 1 111 [] 91.7 8.7e-23 SM00429 4/4 1211 1306 .. 1 111 [] 32.3 6.6e-05 Alignments of top-scoring domains: SM00630: domain 1 of 1, from 119 to 561: score 452.8, E = 1.7e-131 *->fnhllldedsgierlyVGArNriysLslpnlsllsevvtgpvldwps fnhl ++ ++g +yVGA Nr+y+L+ nl+ + ++tgp++d++s KIAA0463 119 FNHLTVHQGTG--AVYVGAINRVYKLT-GNLTIQVAHKTGPEEDNKS 162 ceepnekclkceeCaakgkeeCssneteCdNyirvLlvdndhiadthLyv c++ + +++ Cs+ +t+++N++++L++d+ +++L++ KIAA0463 163 CYP---------PLIVQP---CSEVLTLTNNVNKLLIIDYS---ENRLLA 197 CGTnafgPdVtCrlinlgdlepadeseaedqiltlclyskevnlsesgrg CG++++g+ C l++l+d ++il++++++ke++ls +++ KIAA0463 198 CGSLYQGV---CKLLRLDD----------LFILVEPSHKKEHYLSSVNKT 234 kCPydPlgsstsvvvdggvPgggeLYsgtsadfsgvalsysssdpiifRs + +y++ ++s + ++ ++ g+ +g+ +f++ ls s++ p+ +s KIAA0463 235 GTMYGVIVRSEGEDGKLFI---GTAVDGKQDYFPT--LS-SRKLPRDPES 278 lgttqdgfefefhslrttiydskwg.ydlnepnFVyaFeipesgdgdfVY + +++++++f+s+ ++i++++++ ++++++ ++y+F++ g fVY KIAA0463 279 SAMLDYELHSDFVSSLIKIPSDTLAlVSHFDIFYIYGFAS-----GGFVY 323 FFFrEtaveainr.dcssekavvsRVARvCknDvGGqrlLqkkWtSFLKa F++++++++ + + + +++ +++sR++R+Ck+D +k++S++ + KIAA0463 324 FLTVQPETPEGVAiNSAGDLFYTSRIVRLCKDD--------PKFHSYVSL 365 rLnCsvpgkggvrefyFneLQavfllppGa.LArelgi.esddvlYgVFs + C+ + gv+ +++LQa++l++pG++LA+ +i+ +ddvl+++Fs KIAA0463 366 PFGCT---RAGVE---YRLLQAAYLAKPGDsLAQAFNItSQDDVLFAIFS 409 qgqqtssrdaanpipgSAVCaFslkdInavFneGpfkcyegpnsawlpve +gq+ p SA+CaF+++ In ++ + ++cy+g ++ +e KIAA0463 410 KGQKQYH----HPPDDSALCAFPIRAINLQIKGRLQSCYQG----EGNLE 451 gnkvPyprPGtCisntfregrndssskdlPddvlnfikdhpLmdeavpPl +++ ++ +++ ++P+d+++++ d ++++++++P+ KIAA0463 452 ---LNWLLGKDV----------QCTKAPVPIDDNFCGLDINQPLGGSTPV 488 tgrPllvktgtdyrlTsiaVdrvrgldGgkneytVlFlGTsdGrvlKvvv +g l++ ++r+Ts+a ++++g y V+F+GT +G+++K++ KIAA0463 489 EGLTLYTTS--RDRMTSVASYVYNG-------YSVVFVGTKSGKLKKIRA 529 srsssssssaglesvlleelqvfppgsepirdmvlsskk<-* ++ + v++e ++v ++gs+++rdm++s ++ KIAA0463 530 DGPPH-------GGVQYEMVSVLKDGSPILRDMAFSIDQ 561 SM00423: domain 1 of 3, from 579 to 629: score 55.3, E = 7.9e-12 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw C+qy t+C+eCl+++dp+ CgWC+++++C+r+ C q w KIAA0463 579 SCEQY--TTCGECLSSGDPH-CGWCALHNMCSRRDKCQ------QAW 616 ssg....pssqCp<-* + + sqC KIAA0463 617 EPNrfaaSISQCV 629 SM00423: domain 2 of 3, from 724 to 771: score 36.6, E = 3.3e-06 *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn +Cs++ + C +C+ + + C+WC++++ Ct+ + C+ ++g r n KIAA0463 724 NCSAH--QLCLSCVNSAFR--CHWCKYRNLCTHDpTTCSFQEG-RIN 765 wssgpssqCp<-* +s Cp KIAA0463 766 ISE----DCP 771 SM00423: domain 3 of 3, from 872 to 925: score 43.8, E = 2.3e-08 *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw C++++ sC+ Cl a+ ++CgWCs+e+rCt +++C++ + ++w KIAA0463 872 KCAAQR-ESCGLCLKADRKFECGWCSGERRCTLHQHCTS---PSSPW 914 ssg..pssqCp<-* +++++++ +C+ KIAA0463 915 LDWssHNVKCS 925 SM00429: domain 1 of 4, from 926 to 1021: score 88.8, E = 6.5e-22 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe +P It+i sGp +GGt r+t++G nL+ d+s++ + v v+ + KIAA0463 926 NPQITEILTVSGPPEGGT-RVTIHGVNLGLDFSEIAHHVQVA----G 967 vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg vpCt+lp +++ +++ivC+++++l+ g+ s+pvr+ ++g + + KIAA0463 968 VPCTPLPGEYI---IAEQIVCEMGHALV---GTTSGPVRL--CIGECKPE 1009 vrtelsppspFtYv<-* ++t+ + +++t+v KIAA0463 1010 FMTK--SHQQYTFV 1021 SM00429: domain 2 of 4, from 1022 to 1107: score 98.9, E = 5.9e-25 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe +P++++++P +Gp sGGt +t++G++L++ gs+v v++g + KIAA0463 1022 NPSVLSLNPIRGPESGGT-MVTITGHYLGA-GSSVAVYLG------N 1060 vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg + C+f + s+++ivC++Pp++n g g+vpv +v++d+++ KIAA0463 1061 QTCEFYGR------SMSEIVCVSPPSSN---GLGPVPV----SVSVDRAH 1097 vrtelsppspFtYv<-* v++ +++F+Y KIAA0463 1098 VDS----NLQFEYI 1107 SM00429: domain 3 of 4, from 1109 to 1209: score 91.7, E = 8.7e-23 *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW dP+++ri+P+++++sG t +t++G nLd+ ++++++rv+ +G++ KIAA0463 1109 DPRVQRIEPEWSIASGHT-PLTITGFNLDV-IQEPRIRVKFNGKeS- 1152 evpCtflpsdvhGkdsstaivCrtPpylnqsp.gpgsvpvrvtgevgfdn + C+++++ t+++C +P+ ++++++g +v+ ++ e+gf KIAA0463 1153 VNVCKVVNT--------TTLTCLAPSLTTDYRpGLDTVERPD--EFGFVF 1192 ggvrtel.sppspFtYv<-* +v+++l ++ F Y+ KIAA0463 1193 NNVQSLLiYNDTKFIYY 1209 SM00429: domain 4 of 4, from 1211 to 1306: score 32.3, E = 6.6e-05 *->dPvItrisPssGplsGGteritlcGknLds...dgsvvfvrvgvgGr +P+++ +sP+ + + i l+GknL ++ + g ++v g KIAA0463 1211 NPTFELLSPTGVLDQKPGSPIILKGKNLCPpasGGAKLNYTVLIG-- 1255 vWevpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgf. e+pC ++ s+t+++C+ P ++q + + v+v + v+ + KIAA0463 1256 --ETPCAVTV-------SETQLLCEPPNLTGQ--HKVMVHVGG--MVFSp 1292 dnggvrtelsppspFtYv<-* ++ v ++ s +t KIAA0463 1293 GSVSVISD----SLLTLP 1306 //