hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-03581019/chunk_1/iprscan-20080502-03581019.nocrc
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Query sequence: KIAA0470
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00240                                                  41.7    9.8e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00240    1/1      34    85 ..     1    49 []    41.7  9.8e-08

Alignments of top-scoring domains:
SM00240: domain 1 of 1, from 34 to 85: score 41.7, E = 9.8e-08
                   *->tvtiGRsscdivlpspsiSRrHaeiv.dgd....yliDlgenSsNGT
                       + +GR+ c + l+s+s+ ++Ha+i  d  ++++ ++Dlg  S NGT
    KIAA0470    34    MIFVGRDDCELMLQSRSVDKQHAVINyDAStdehLVKDLG--SLNGT 78   

                   fVNgrrv<-*
                   fVN++r+   
    KIAA0470    79 FVNDVRI    85   

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