HUGE

Gene/Protein Characteristic Table for KIAA0475

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK00545
Accession No. :	AB007944
Description :	Protein FAM20B precursor.
HUGO Gene Name :	family with sequence similarity 20, member B (FAM20B)
Clone Name :	hh00451 [Vector Info]
Flexi ORF Clone :	pF1KSDA0475
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5983 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4417 bp

Genome contig ID gi89161185f_177179470
PolyA signal sequence
(AATAAA,-7)
+----*----+----*----+----*----+----
CTGAAAAAAGAAAATGAATAAAGATTTTAATAAAT
Flanking genome sequence
(132852 - 132901)
----+----*----+----*----+----*----+----*----+----*
ATTGATATCTGATCTTTTCCTCTTCTTTCCCCCTTCAGGATATTTCCAGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 f 177261654 177312320 8 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 438 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
O75063	1.7e-185	100.0	Protein FAM20B;...	Homo sapiens
XP_514027	3.8e-184	99.0	family with seq...	Pan troglodytes
XP_001115532	2.6e-183	98.8	family with seq...	Macaca mulatta
Q8VCS3	5.7e-182	97.3	Protein FAM20B;...	Mus musculus
XP_537175	9.3e-182	97.8	similar to Prot...	Canis lupus fam...

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR009581 204 431 PF06702 Protein of unknown function DUF1193

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR009581	204	431	PF06702	Protein of unknown function DUF1193

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 35 RVVLLAILLVIFIFTKVFLIDNL 57 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	35	RVVLLAILLVIFIFTKVFLIDNL	57	PRIMARY	23

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: ATCAAAAGAGAGGGTAGTGGC
Primer_r	: GGTGAAACTGGGAACAACTAC
PCR product length	: 81 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	4417 bp
Genome contig ID	gi89161185f_177179470
PolyA signal sequence (AATAAA,-7)	+--------+--------+----*----+---- CTGAAAAAAGAAAATGAATAAAGATTTTAATAAAT
Flanking genome sequence (132852 - 132901)	----+--------+--------+--------+--------+----* ATTGATATCTGATCTTTTCCTCTTCTTTCCCCCTTCAGGATATTTCCAGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	f	177261654	177312320	8	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0475

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information