# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg01128.fasta.huge -Q ../query/KIAA0489.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0489, 192 aa
 vs ./tmplib.23147 library

1987313 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.0160+/-0.00441; mu= 16.3099+/- 0.302
 mean_var=74.3317+/-16.840, 0's: 0 Z-trim: 3  B-trim: 5 in 1/39
 Lambda= 0.148760

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0792  ( 828 res)   hk05691                     ( 828)  780 176.2 2.9e-45


>>KIAA0792  ( 828 res)   hk05691                          (828 aa)
 initn: 780 init1: 780 opt: 780  Z-score: 904.5  bits: 176.2 E(): 2.9e-45
Smith-Waterman score: 780;  100.000% identity (100.000% similar) in 113 aa overlap (80-192:270-382)

      50        60        70        80        90       100         
KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK
                                     ::::::::::::::::::::::::::::::
KIAA07 KYKEENLVRRTLFITGLPRDARKETVESHFRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK
     240       250       260       270       280       290         

     110       120       130       140       150       160         
KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
KIAA07 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE
     300       310       320       330       340       350         

     170       180       190                                       
KIAA04 ERHVQDQPLGMAFVTFQEKSMAT                                     
       :::::::::::::::::::::::                                     
KIAA07 ERHVQDQPLGMAFVTFQEKSMATYILKDFNACKCQSLQCKGEPQPSSHSRELYTSKWTVT
     360       370       380       390       400       410         




192 residues in 1 query   sequences
1987313 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:47 2008 done: Thu Dec 18 15:23:48 2008
 Total Scan time:  0.260 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]