# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hg01128.fasta.nr -Q ../query/KIAA0489.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0489, 192 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827087 sequences Expectation_n fit: rho(ln(x))= 4.2951+/-0.000181; mu= 11.6031+/- 0.010 mean_var=58.5727+/-11.135, 0's: 27 Z-trim: 29 B-trim: 12 in 1/66 Lambda= 0.167582 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|134035045|sp|O94886.3|TM63A_HUMAN RecName: Full ( 807) 780 196.9 6.5e-48 gi|168267586|dbj|BAG09849.1| transmembrane protein ( 807) 780 196.9 6.5e-48 gi|193785643|dbj|BAG51078.1| unnamed protein produ ( 807) 775 195.7 1.5e-47 gi|75041497|sp|Q5R826.1|TM63A_PONAB RecName: Full= ( 807) 770 194.5 3.5e-47 gi|154425919|gb|AAI51399.1| TMEM63A protein [Bos t ( 803) 721 182.6 1.3e-43 gi|74215333|dbj|BAE41880.1| unnamed protein produc ( 773) 690 175.1 2.2e-41 gi|81879729|sp|Q91YT8.1|TM63A_MOUSE RecName: Full= ( 804) 690 175.1 2.3e-41 gi|148681192|gb|EDL13139.1| transmembrane protein ( 812) 690 175.1 2.3e-41 gi|148681191|gb|EDL13138.1| transmembrane protein ( 822) 690 175.1 2.3e-41 gi|109018116|ref|XP_001089796.1| PREDICTED: simila ( 853) 688 174.7 3.3e-41 gi|73961485|ref|XP_547510.2| PREDICTED: similar to ( 854) 688 174.7 3.3e-41 gi|149040882|gb|EDL94839.1| transmembrane protein ( 595) 676 171.6 1.9e-40 gi|205360936|ref|NP_001127968.2| transmembrane pro ( 804) 676 171.8 2.4e-40 gi|149749213|ref|XP_001490828.1| PREDICTED: simila ( 804) 668 169.8 9.2e-40 gi|149641617|ref|XP_001512688.1| PREDICTED: hypoth ( 801) 606 154.8 3e-35 gi|118087827|ref|XP_419384.2| PREDICTED: similar t ( 751) 515 132.8 1.2e-28 gi|111308093|gb|AAI21430.1| Transmembrane protein ( 799) 478 123.9 6.1e-26 gi|56270467|gb|AAH87407.1| LOC496016 protein [Xeno ( 803) 468 121.5 3.3e-25 gi|189525619|ref|XP_001341225.2| PREDICTED: zgc:15 ( 412) 421 109.8 5.4e-22 gi|85720007|gb|ABC75572.1| hypothetical protein [I ( 306) 412 107.5 2e-21 gi|189527230|ref|XP_700116.3| PREDICTED: similar t ( 801) 416 108.9 2e-21 gi|50949999|emb|CAH10540.1| hypothetical protein [ ( 742) 415 108.6 2.2e-21 gi|21739774|emb|CAD38916.1| hypothetical protein [ ( 519) 412 107.7 2.9e-21 gi|56206167|emb|CAI20530.1| transmembrane protein ( 819) 412 107.9 4e-21 gi|37590694|gb|AAH59283.1| Tmem63b protein [Mus mu ( 656) 411 107.6 4e-21 gi|76650425|ref|XP_883366.1| PREDICTED: transmembr ( 830) 412 107.9 4e-21 gi|194039385|ref|XP_001929588.1| PREDICTED: transm ( 830) 412 107.9 4e-21 gi|74744754|sp|Q5T3F8.1|TM63B_HUMAN RecName: Full= ( 832) 412 107.9 4e-21 gi|119624653|gb|EAX04248.1| transmembrane protein ( 882) 412 108.0 4.2e-21 gi|119624652|gb|EAX04247.1| transmembrane protein ( 895) 412 108.0 4.2e-21 gi|194223554|ref|XP_001497713.2| PREDICTED: simila ( 941) 412 108.0 4.4e-21 gi|123783877|sp|Q3TWI9.1|TM63B_MOUSE RecName: Full ( 832) 411 107.7 4.8e-21 gi|26355286|dbj|BAC41131.1| unnamed protein produc ( 832) 411 107.7 4.8e-21 gi|21752543|dbj|BAC04207.1| unnamed protein produc ( 491) 407 106.5 6.4e-21 gi|47228985|emb|CAG09500.1| unnamed protein produc ( 852) 402 105.5 2.2e-20 gi|126310104|ref|XP_001367071.1| PREDICTED: simila ( 933) 400 105.1 3.3e-20 gi|118088063|ref|XP_419493.2| PREDICTED: similar t ( 838) 393 103.3 9.8e-20 gi|220678490|emb|CAH68864.2| novel protein [Danio ( 764) 355 94.1 5.3e-17 gi|141795701|gb|AAI39666.1| Si:ch211-117l16.1 prot ( 802) 349 92.7 1.5e-16 gi|47224218|emb|CAG09064.1| unnamed protein produc ( 779) 339 90.3 7.9e-16 gi|73973017|ref|XP_852005.1| PREDICTED: similar to ( 661) 310 83.2 9e-14 gi|189531109|ref|XP_001340928.2| PREDICTED: simila ( 707) 306 82.2 1.9e-13 gi|169146683|emb|CAQ15065.1| novel protein [Danio ( 796) 306 82.3 2e-13 gi|50748524|ref|XP_421286.1| PREDICTED: hypothetic ( 830) 282 76.5 1.2e-11 gi|109486729|ref|XP_001064861.1| PREDICTED: simila ( 811) 278 75.5 2.2e-11 gi|117558095|gb|AAI27313.1| LOC100036641 protein [ ( 801) 273 74.3 5.1e-11 gi|47230182|emb|CAG10596.1| unnamed protein produc ( 745) 265 72.4 1.9e-10 gi|34783710|gb|AAH57136.1| Tmem63b protein [Mus mu ( 523) 258 70.5 4.6e-10 gi|126282569|ref|XP_001374136.1| PREDICTED: simila ( 837) 260 71.2 4.7e-10 gi|158455058|gb|AAI19858.2| TMEM63B protein [Bos t ( 521) 254 69.6 9.1e-10 >>gi|134035045|sp|O94886.3|TM63A_HUMAN RecName: Full=Tra (807 aa) initn: 780 init1: 780 opt: 780 Z-score: 1016.4 bits: 196.9 E(): 6.5e-48 Smith-Waterman score: 780; 100.000% identity (100.000% similar) in 113 aa overlap (80-192:249-361) 50 60 70 80 90 100 KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK :::::::::::::::::::::::::::::: gi|134 KYKEENLVRRTLFITGLPRDARKETVESHFRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK 220 230 240 250 260 270 110 120 130 140 150 160 KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE 280 290 300 310 320 330 170 180 190 KIAA04 ERHVQDQPLGMAFVTFQEKSMAT ::::::::::::::::::::::: gi|134 ERHVQDQPLGMAFVTFQEKSMATYILKDFNACKCQSLQCKGEPQPSSHSRELYTSKWTVT 340 350 360 370 380 390 >>gi|168267586|dbj|BAG09849.1| transmembrane protein 63A (807 aa) initn: 780 init1: 780 opt: 780 Z-score: 1016.4 bits: 196.9 E(): 6.5e-48 Smith-Waterman score: 780; 100.000% identity (100.000% similar) in 113 aa overlap (80-192:249-361) 50 60 70 80 90 100 KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK :::::::::::::::::::::::::::::: gi|168 KYKEENLVRRTLFITGLPRDARKETVESHFRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK 220 230 240 250 260 270 110 120 130 140 150 160 KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE 280 290 300 310 320 330 170 180 190 KIAA04 ERHVQDQPLGMAFVTFQEKSMAT ::::::::::::::::::::::: gi|168 ERHVQDQPLGMAFVTFQEKSMATYILKDFNACKCQSLQCKGEPQPSSHSRELYTSKWTVT 340 350 360 370 380 390 >>gi|193785643|dbj|BAG51078.1| unnamed protein product [ (807 aa) initn: 775 init1: 775 opt: 775 Z-score: 1009.9 bits: 195.7 E(): 1.5e-47 Smith-Waterman score: 775; 99.115% identity (100.000% similar) in 113 aa overlap (80-192:249-361) 50 60 70 80 90 100 KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK ::.::::::::::::::::::::::::::: gi|193 KYKEENLVRRTLFITGLPRDARKETVESHFRDVYPTCEVVDVQLCYNVAKLIYLCKEKKK 220 230 240 250 260 270 110 120 130 140 150 160 KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE 280 290 300 310 320 330 170 180 190 KIAA04 ERHVQDQPLGMAFVTFQEKSMAT ::::::::::::::::::::::: gi|193 ERHVQDQPLGMAFVTFQEKSMATYILKDFNACKCQSLQCKGEPQPSSHSRELYTSKWTVT 340 350 360 370 380 390 >>gi|75041497|sp|Q5R826.1|TM63A_PONAB RecName: Full=Tran (807 aa) initn: 770 init1: 770 opt: 770 Z-score: 1003.4 bits: 194.5 E(): 3.5e-47 Smith-Waterman score: 770; 98.230% identity (99.115% similar) in 113 aa overlap (80-192:249-361) 50 60 70 80 90 100 KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK :::::::::::::::::::::::::::.:: gi|750 KYKEENLVRRTLFITGLPRDARKETVESHFRDAYPTCEVVDVQLCYNVAKLIYLCKERKK 220 230 240 250 260 270 110 120 130 140 150 160 KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|750 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVQGCEWEDAISYYTRMKDRLLERITEE 280 290 300 310 320 330 170 180 190 KIAA04 ERHVQDQPLGMAFVTFQEKSMAT ::::::::::::::::::::::: gi|750 ERHVQDQPLGMAFVTFQEKSMATYILKDFNACKCQSLQCKGEPQPSSHSRELYTSKWTVT 340 350 360 370 380 390 >>gi|154425919|gb|AAI51399.1| TMEM63A protein [Bos tauru (803 aa) initn: 721 init1: 721 opt: 721 Z-score: 939.4 bits: 182.6 E(): 1.3e-43 Smith-Waterman score: 726; 80.292% identity (86.861% similar) in 137 aa overlap (66-192:224-360) 40 50 60 70 80 KIAA04 RSPLAQKPAARSLCHPFPWIRGHVSCLGCFLFQRCLLPPSLPGH----------RDAYPT : .: :. .:: : :::::: gi|154 LHTVFAILYLILTVVFMRHHTQSIKYKEESLVRRTLFVTGLPRHAKKETVESHFRDAYPT 200 210 220 230 240 250 90 100 110 120 130 140 KIAA04 CEVVDVQLCYNVAKLIYLCKEKKKTEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLG ::::.:::::.::::::::::.:::::::::::::::::::::.:::::::::::::: : gi|154 CEVVEVQLCYDVAKLIYLCKERKKTEKSLTYYTNLQVKTGQRTFINPKPCGQFCCCEVRG 260 270 280 290 300 310 150 160 170 180 190 KIAA04 CEWEDAISYYTRMKDRLLERITEEERHVQDQPLGMAFVTFQEKSMAT ::::::::::::::: :.::::::: .:::::::::::::::::::: gi|154 CEWEDAISYYTRMKDGLMERITEEECRVQDQPLGMAFVTFQEKSMATYVLKDFNACKCQG 320 330 340 350 360 370 gi|154 LQCKGEPQPSSHGRELRISRWSVTFAAYPEDICWKNLSIQGFRWWFQWLGINFILFVVLF 380 390 400 410 420 430 >>gi|74215333|dbj|BAE41880.1| unnamed protein product [M (773 aa) initn: 690 init1: 690 opt: 690 Z-score: 899.1 bits: 175.1 E(): 2.2e-41 Smith-Waterman score: 690; 89.381% identity (95.575% similar) in 113 aa overlap (80-192:248-360) 50 60 70 80 90 100 KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK ::::::::::::::::.::::::::::.:: gi|742 RYKEESLVRQTLFITGLPREARKETVESHFRDAYPTCEVVDVQLCYSVAKLIYLCKERKK 220 230 240 250 260 270 110 120 130 140 150 160 KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE ::::::::::::.:::.::::::::::::::::: ::: ::::::::::.: :::::: : gi|742 TEKSLTYYTNLQAKTGRRTLINPKPCGQFCCCEVQGCEREDAISYYTRMNDSLLERITAE 280 290 300 310 320 330 170 180 190 KIAA04 ERHVQDQPLGMAFVTFQEKSMAT : .:::::::::::::.:::::: gi|742 ESRVQDQPLGMAFVTFREKSMATYILKDFNACKCQGLRCKGEPQPSSYSRELCVSKWTVT 340 350 360 370 380 390 >>gi|81879729|sp|Q91YT8.1|TM63A_MOUSE RecName: Full=Tran (804 aa) initn: 690 init1: 690 opt: 690 Z-score: 898.9 bits: 175.1 E(): 2.3e-41 Smith-Waterman score: 690; 89.381% identity (95.575% similar) in 113 aa overlap (80-192:248-360) 50 60 70 80 90 100 KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK ::::::::::::::::.::::::::::.:: gi|818 RYKEESLVRQTLFITGLPREARKETVESHFRDAYPTCEVVDVQLCYSVAKLIYLCKERKK 220 230 240 250 260 270 110 120 130 140 150 160 KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE ::::::::::::.:::.::::::::::::::::: ::: ::::::::::.: :::::: : gi|818 TEKSLTYYTNLQAKTGRRTLINPKPCGQFCCCEVQGCEREDAISYYTRMNDSLLERITAE 280 290 300 310 320 330 170 180 190 KIAA04 ERHVQDQPLGMAFVTFQEKSMAT : .:::::::::::::.:::::: gi|818 ESRVQDQPLGMAFVTFREKSMATYILKDFNACKCQGLRCKGEPQPSSYSRELCVSKWTVT 340 350 360 370 380 390 >>gi|148681192|gb|EDL13139.1| transmembrane protein 63a, (812 aa) initn: 690 init1: 690 opt: 690 Z-score: 898.8 bits: 175.1 E(): 2.3e-41 Smith-Waterman score: 690; 89.381% identity (95.575% similar) in 113 aa overlap (80-192:256-368) 50 60 70 80 90 100 KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK ::::::::::::::::.::::::::::.:: gi|148 RYKEESLVRQTLFITGLPREARKETVESHFRDAYPTCEVVDVQLCYSVAKLIYLCKERKK 230 240 250 260 270 280 110 120 130 140 150 160 KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE ::::::::::::.:::.::::::::::::::::: ::: ::::::::::.: :::::: : gi|148 TEKSLTYYTNLQAKTGRRTLINPKPCGQFCCCEVQGCEREDAISYYTRMNDSLLERITAE 290 300 310 320 330 340 170 180 190 KIAA04 ERHVQDQPLGMAFVTFQEKSMAT : .:::::::::::::.:::::: gi|148 ESRVQDQPLGMAFVTFREKSMATYILKDFNACKCQGLRCKGEPQPSSYSRELCVSKWTVT 350 360 370 380 390 400 >>gi|148681191|gb|EDL13138.1| transmembrane protein 63a, (822 aa) initn: 690 init1: 690 opt: 690 Z-score: 898.7 bits: 175.1 E(): 2.3e-41 Smith-Waterman score: 690; 89.381% identity (95.575% similar) in 113 aa overlap (80-192:266-378) 50 60 70 80 90 100 KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK ::::::::::::::::.::::::::::.:: gi|148 RYKEESLVRQTLFITGLPREARKETVESHFRDAYPTCEVVDVQLCYSVAKLIYLCKERKK 240 250 260 270 280 290 110 120 130 140 150 160 KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE ::::::::::::.:::.::::::::::::::::: ::: ::::::::::.: :::::: : gi|148 TEKSLTYYTNLQAKTGRRTLINPKPCGQFCCCEVQGCEREDAISYYTRMNDSLLERITAE 300 310 320 330 340 350 170 180 190 KIAA04 ERHVQDQPLGMAFVTFQEKSMAT : .:::::::::::::.:::::: gi|148 ESRVQDQPLGMAFVTFREKSMATYILKDFNACKCQGLRCKGEPQPSSYSRELCVSKWTVT 360 370 380 390 400 410 >>gi|109018116|ref|XP_001089796.1| PREDICTED: similar to (853 aa) initn: 688 init1: 688 opt: 688 Z-score: 895.9 bits: 174.7 E(): 3.3e-41 Smith-Waterman score: 688; 93.396% identity (96.226% similar) in 106 aa overlap (80-185:302-407) 50 60 70 80 90 100 KIAA04 HPFPWIRGHVSCLGCFLFQRCLLPPSLPGHRDAYPTCEVVDVQLCYNVAKLIYLCKEKKK :::::::::::::::::::::::::::.:: gi|109 KYKEENLVRRTLFITGLPRDARKETVESHFRDAYPTCEVVDVQLCYNVAKLIYLCKERKK 280 290 300 310 320 330 110 120 130 140 150 160 KIAA04 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TEKSLTYYTNLQVKTGQRTLINPKPCGQFCCCEVLGCEWEDAISYYTRMKDRLLERITEE 340 350 360 370 380 390 170 180 190 KIAA04 ERHVQDQPLGMAFVTFQEKSMAT : ::::. ::.: :: gi|109 ECHVQDRSLGLAVSTFPCSILKDFNACKCQSLQCKGEPQPSSHSRELCTSKWTVTFAADP 400 410 420 430 440 450 192 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 00:55:56 2009 done: Thu Mar 5 01:02:09 2009 Total Scan time: 1215.170 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]