hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-04324552/chunk_1/iprscan-20080502-04324552.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0491 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00721 310.7 1e-88 1 SM00326 63.5 2.6e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00721 1/1 36 280 .. 1 260 [] 310.7 1e-88 SM00326 1/1 334 391 .] 1 58 [] 63.5 2.6e-14 Alignments of top-scoring domains: SM00721: domain 1 of 1, from 36 to 280: score 310.7, E = 1e-88 *->glkKaA..ffnRakqkvgeKvGkaekTkvLDedFeelerrfdtteae +l+ +A++f++Ra+q+++eK+G+aekT+ LD + e+l+ ++++t+ + KIAA0491 36 KLAADAgtFLSRAVQFTEEKLGQAEKTE-LDAHLENLLSKAECTKIW 81 teklqkdtkeylQpnrpalraklasqkklskslgevyeggyPqaeelLae tek++k+t+ lQpn p++r ++++++kl+++ + +++++ elL++ KIAA0491 82 TEKIMKQTEVLLQPN-PNARIEEFVYEKLDRKAPSRINNP-----ELLGQ 125 amidageglgadsslygkaldklgealkkllqakeslddqvkqtfilpll +midag ++g ++ yg+al+k+ge+ k++++a ++l+++++ +f+ pl+ KIAA0491 126 YMIDAGTEFGPGTA-YGNALIKCGETQKRIGTADRELIQTSALNFLTPLR 174 nfllkefkeikkarkKlerkrLDyDsartklkkakkkkekkkkdeaklak nf +++ k+i k+rk l++krLD+D+a+t+lkkak+++ +++ KIAA0491 175 NFIEGDYKTIAKERKLLQNKRLDLDAAKTRLKKAKAAETRNS-------- 216 aeEelreAkqefEelneqLveeLpqlidsrvdffvnslqalieaqlryhr e+elr ++ef++ +++++++L+++i+s + +++++l +++eaq+ y++ KIAA0491 217 SEQELRITQSEFDR-QAEITRLLLEGISSTHAHHLRCLNDFVEAQMTYYA 265 esykllqqlqqqldk<-* ++y+ + +lq+ql++ KIAA0491 266 QCYQYMLDLQKQLGS 280 SM00326: domain 1 of 1, from 334 to 391: score 63.5, E = 2.6e-14 *->eyvvAlYDyeaqnedELsFkkGDiitvleks..ddgWweGelnrtGk +++++lYDy+a n+ ELs+ ++++itv + ++ d++W+ Ge++ ++ KIAA0491 334 RKARVLYDYDAANSTELSLLADEVITVFSVVgmDSDWLMGERG--NQ 378 eGlfPsnYVeeie<-* +G +P +Y+e+++ KIAA0491 379 KGKVPITYLELLN 391 //