# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hg00106.fasta.nr -Q ../query/KIAA0495.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0495, 209 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7805552 sequences Expectation_n fit: rho(ln(x))= 6.6747+/-0.000212; mu= 2.7954+/- 0.012 mean_var=160.0840+/-30.972, 0's: 39 Z-trim: 76 B-trim: 440 in 1/66 Lambda= 0.101368 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|15145795|gb|AAK61382.1| basic proline-rich prot ( 511) 249 47.5 0.0043 gi|15145793|gb|AAK61381.1| basic proline-rich prot ( 566) 249 47.5 0.0046 gi|163771888|gb|EDQ85549.1| predicted protein [Mon ( 488) 248 47.3 0.0046 gi|210090343|gb|EEA38622.1| hypothetical protein B ( 513) 242 46.4 0.0088 gi|198132708|gb|EDY68374.1| GA27442 [Drosophila ps ( 935) 246 47.3 0.0088 gi|210087765|gb|EEA36127.1| hypothetical protein B ( 488) 241 46.3 0.0094 >>gi|15145795|gb|AAK61382.1| basic proline-rich protein (511 aa) initn: 173 init1: 173 opt: 249 Z-score: 211.7 bits: 47.5 E(): 0.0043 Smith-Waterman score: 258; 36.943% identity (44.586% similar) in 157 aa overlap (4-152:65-194) 10 20 30 KIAA04 MGAGDGPGAWWVAVGADGGGTLPPTGPGHLHPA :::: : :. :: :: :. gi|151 LRPPPGGGPPRPPPPEESQGEGHQKRPRPPGDGP-----EQGPAPPGARPPPGPP--PPG 40 50 60 70 80 40 50 60 70 80 90 KIAA04 ACPGGPALPVHRPPRVPGLGSPGPLTGLGHLPGKAPAPPSA--PAGRDPLLAREASPGGI : ::: : ::: :: ::: : .::::.: : : : :: gi|151 PPPPGPAPPGARPP--PGPPPPGP-------PPPGPAPPGARPPPGPPP-------PGPP 90 100 110 120 130 100 110 120 130 140 KIAA04 VLAPSPKGSAPSEHPPP------LGDHSSSDGPTPAPAARGSAHPPRLPRSLPLLLWDNQ .:.: :. : ::: : : :: : :..:::: : : .. gi|151 PPGPAPPGARPPPGPPPPAGGLQQGPAPSHVGPKKKPPPPGAGHPPRPP---PPANESQP 140 150 160 170 180 150 160 170 180 190 200 KIAA04 GPQLPAPQVWGLRHERLCSQGGERRSHGSLGRGSRLLPFPSRTRQWAGKRRLYTTTRRSS ::. : : gi|151 GPR-PPPGPPSPPANDSQEGSPPSADGPQQGPAPSGDKPKKKPPPPAGPPPPPPPPPGPP 190 200 210 220 230 240 >>gi|15145793|gb|AAK61381.1| basic proline-rich protein (566 aa) initn: 173 init1: 173 opt: 249 Z-score: 211.2 bits: 47.5 E(): 0.0046 Smith-Waterman score: 258; 36.943% identity (44.586% similar) in 157 aa overlap (4-152:65-194) 10 20 30 KIAA04 MGAGDGPGAWWVAVGADGGGTLPPTGPGHLHPA :::: : :. :: :: :. gi|151 LRPPPGGGPPRPPPPEESQGEGHQKRPRPPGDGP-----EQGPAPPGARPPPGPP--PPG 40 50 60 70 80 40 50 60 70 80 90 KIAA04 ACPGGPALPVHRPPRVPGLGSPGPLTGLGHLPGKAPAPPSA--PAGRDPLLAREASPGGI : ::: : ::: :: ::: : .::::.: : : : :: gi|151 PPPPGPAPPGARPP--PGPPPPGP-------PPPGPAPPGARPPPGPPP-------PGPP 90 100 110 120 130 100 110 120 130 140 KIAA04 VLAPSPKGSAPSEHPPP------LGDHSSSDGPTPAPAARGSAHPPRLPRSLPLLLWDNQ .:.: :. : ::: : : :: : :..:::: : : .. gi|151 PPGPAPPGARPPPGPPPPAGGLQQGPAPSHVGPKKKPPPPGAGHPPRPP---PPANESQP 140 150 160 170 180 150 160 170 180 190 200 KIAA04 GPQLPAPQVWGLRHERLCSQGGERRSHGSLGRGSRLLPFPSRTRQWAGKRRLYTTTRRSS ::. : : gi|151 GPR-PPPGPPSPPANDSQEGSPPSADGPQQGPAPSGDKPKKKPPPPAGPPPPPPPPPGPP 190 200 210 220 230 240 >>gi|163771888|gb|EDQ85549.1| predicted protein [Monosig (488 aa) initn: 152 init1: 152 opt: 248 Z-score: 211.1 bits: 47.3 E(): 0.0046 Smith-Waterman score: 248; 33.962% identity (49.057% similar) in 159 aa overlap (1-153:141-290) 10 20 KIAA04 MGAGDGPGAWWVAVGADGGGTLPPTG-PGH :: : :: :.:.: :: : : gi|163 SAEEAAGVPPPPPTGAGAPPPPPPGATGYPMGPGGGPPP----PPASGAGYPPPPGAPPM 120 130 140 150 160 30 40 50 60 70 80 KIAA04 LHPAACPGGPALP--VHRPPRVPGLGSPGPLTGLGHLPGKAPAPPSAPAGRDPLLAREAS .:.: :.: : .. :: :: . ::: : :: :. : . : : : . gi|163 PYPGAPYGAPMPPPGMYGPP--PG-AYPGPHYGGPPPPGMYPGGPPFGGPRPPYGAPYGP 170 180 190 200 210 220 90 100 110 120 130 140 KIAA04 PGG-IVLAPSPKGSAPSEHPPPLGDHSSSDGPTPAPAARGSAHPPRLPRS--LPLLLWDN ::: . :.: :. :::.. .. : :.: :. :: : . : . gi|163 PGGGYPMPPGPPGARMPPMPPPVSGYAPPPGSGAPPVA--SSGPPSAPPASYAPGPTSAS 230 240 250 260 270 280 150 160 170 180 190 200 KIAA04 QGPQLPAPQVWGLRHERLCSQGGERRSHGSLGRGSRLLPFPSRTRQWAGKRRLYTTTRRS .:: .: :: gi|163 SGPPIPPPQHQQPPPPPQQQQQQPPPQQQQQAQPPQAQPQQQAPPPLPSGPGQTTPVAST 290 300 310 320 330 340 >>gi|210090343|gb|EEA38622.1| hypothetical protein BRAFL (513 aa) initn: 188 init1: 188 opt: 242 Z-score: 206.1 bits: 46.4 E(): 0.0088 Smith-Waterman score: 264; 36.943% identity (45.223% similar) in 157 aa overlap (2-152:278-417) 10 20 30 KIAA04 MGAGDGPGAWWVAVGADGGGTLPPTGP-GHL :: ::: : :. :: :: : gi|210 GPDAPPPPGAPPPPGPGAPPPPGAPPPPGPGAPPPPGA----PPPPGPGAPPPPGPPGPP 250 260 270 280 290 300 40 50 60 70 80 KIAA04 HPAACPGGPALPVHRPPRVPGL-GSPGPLTGLGHLPGKAPAPPSAPAGRDPLLAREASPG : . :: :. : :: :: : ::: :: : :.::. :. : . . : gi|210 GPPGPPGPPTGPPGPPPGPPGPPGPPGPPTGPPGPPPGPPGPPGPPGPPGPPCGPSGPPP 310 320 330 340 350 360 90 100 110 120 130 140 KIAA04 GIVLAPSPKGSAPSEH----PPPLGDHSSSDGPTPAPAARGSAHPPRLPRSLPLLLWDNQ : ::.: : :. ::: : . :: :.: : : . :: : : gi|210 G---APGPPGPPPGPPAGPGPPPPGPAPGPPGPPPGPPA-GPGPPP--PGPAP------- 370 380 390 400 410 150 160 170 180 190 200 KIAA04 GPQLPAPQVWGLRHERLCSQGGERRSHGSLGRGSRLLPFPSRTRQWAGKRRLYTTTRRSS :: : : gi|210 GPPGPPPGPPAGPGPPPPGPAPGPPGPPGLGPPGPPPPGPAPAAPGPPAGGGGLSGLGAV 420 430 440 450 460 470 >>gi|198132708|gb|EDY68374.1| GA27442 [Drosophila pseudo (935 aa) initn: 116 init1: 116 opt: 246 Z-score: 206.1 bits: 47.3 E(): 0.0088 Smith-Waterman score: 252; 37.267% identity (49.689% similar) in 161 aa overlap (2-156:191-336) 10 20 KIAA04 MGAGDGPGAWWVAVGADGGGTLPP--TGPGH : : ::: : : :: : : : ::: gi|198 TPGGPEPGGPGSGWPGHGGPEPGGPRPGSTGPG-GPGPGWPAPGAPGQGWPAPGVPGPGG 170 180 190 200 210 30 40 50 60 70 80 KIAA04 LHPAA-CPGGPALPVHRPPRVPGLGSPGP-LTGLGHLPGKAPAPPSAPAGRDPLLAREAS .:.. ::::. : : :: ::::: : : : :: . :..:. : .: . gi|198 HEPGGPGPGGPG-PGSLGPGRPGPGSPGPGLPGPGG-PGPGGLGPAGPTPGGPGPGRP-T 220 230 240 250 260 270 90 100 110 120 130 140 KIAA04 PGGIVLAPSPKGSAPSEHPPPLGDHS--SSDGPTPAPAARGSAHPPRLPRSLPLLLWDNQ :: :.: : :. : . . . ::: :.:.. :. : . : gi|198 PG----RPGPDGPEPGVPGPGWSGPGVQGPDGPEPGPTGPGDPTPGGAGPGGP------- 280 290 300 310 320 150 160 170 180 190 200 KIAA04 GPQLPAPQVWGLRHERLCSQGGERRSHGSLGRGSRLLPFPSRTRQWAGKRRLYTTTRRSS :: ::: : : gi|198 GPGRPAPAVPGPDGPEPGGPGPGWSGPGGPKPGGSESGGLGQGWPGYGGPEPGGTGPGGQ 330 340 350 360 370 380 >>gi|210087765|gb|EEA36127.1| hypothetical protein BRAFL (488 aa) initn: 155 init1: 155 opt: 241 Z-score: 205.6 bits: 46.3 E(): 0.0094 Smith-Waterman score: 261; 36.875% identity (44.375% similar) in 160 aa overlap (2-152:273-422) 10 20 30 KIAA04 MGAGDGPGAWWVAVGADGGGTLPPTGP-GHL :: ::: : :. :: :: : gi|210 GPDAPPPPGAPPPPGPGAPPPPGAPPPPGPGAPPPPGA----PPPPGPGAPPPPGPPGPP 250 260 270 280 290 40 50 60 70 80 KIAA04 HPAACPGGPALPVHRPPRVPGL----GSPGPLTGLGHLPGKAPAPPSAPAGRDPLLAREA : . :: :. : :: :: : ::: : . : ::.::. : : : gi|210 GPPGPPGPPTGPPGPPPGPPGPPGPPGPPGPPCGPSGPPPGAPGPPGPPPG-PPAGPGPP 300 310 320 330 340 350 90 100 110 120 130 140 KIAA04 SPGGIVLAPSPKGSAPSEH----PPPLGDHSSSDGPTPAPAARGSAHPPRLPRSLPLLLW :: ::.: : :. ::: : . :: :.: : : . :: : : gi|210 PPGP---APGPPGPPPGPPAGPGPPPPGPAPGPPGPPPGPPA-GPGPPPPGPAPGPPGP- 360 370 380 390 400 410 150 160 170 180 190 200 KIAA04 DNQGPQLPAPQVWGLRHERLCSQGGERRSHGSLGRGSRLLPFPSRTRQWAGKRRLYTTTR . :: : : gi|210 PGLGPPGPPPPGPAPAAPGPPAGGGGLSGLGAVKLKSAGDRPPPSRGLGPPKPQPKIPPA 420 430 440 450 460 470 209 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 01:30:15 2009 done: Thu Mar 5 01:35:59 2009 Total Scan time: 1233.280 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]