# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg00404.fasta.huge -Q ../query/KIAA0500.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0500, 213 aa
 vs ./tmplib.23147 library

1987292 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.7296+/-0.00458; mu= 17.4582+/- 0.313
 mean_var=72.8355+/-16.888, 0's: 0 Z-trim: 6  B-trim: 0 in 0/40
 Lambda= 0.150281

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1651  ( 91 res)   fj00563                      (  91)  283 69.0 6.7e-14
KIAA0364  ( 1437 res)   hh00116                    (1437)  147 41.3 0.00024


>>KIAA1651  ( 91 res)   fj00563                           (91 aa)
 initn: 256 init1: 136 opt: 283  Z-score: 341.4  bits: 69.0 E(): 6.7e-14
Smith-Waterman score: 283;  51.807% identity (84.337% similar) in 83 aa overlap (132-213:2-84)

             110       120       130       140       150       160 
KIAA05 FGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLGSGNPPASASRVAGSTGA
                                     :.:..::.:.: ::.. :.:::.:::.:::
KIAA16                              GGMISVHCNLHLPGSSDSPVSASQVAGTTGA
                                            10        20        30 

             170        180       190       200       210          
KIAA05 CHHAHLIFLSFIDTGL-TVAQAGLELLASGDPPALAYQNAGIIGMNHCAWPSL       
        : : .::. .... .  :.:::::::.:::::..: :.::: :..: . :..       
KIAA16 YHDAWIIFVILVQSEFHLVVQAGLELLTSGDPPTMASQSAGITGISHRTQPDIALLDFEH
              40        50        60        70        80        90 

>>KIAA0364  ( 1437 res)   hh00116                         (1437 aa)
 initn: 169 init1: 147 opt: 147  Z-score: 170.0  bits: 41.3 E(): 0.00024
Smith-Waterman score: 147;  60.606% identity (93.939% similar) in 33 aa overlap (119-151:26-58)

       90       100       110       120       130       140        
KIAA05 AQVPFPSCADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLGSGNP
                                     .. :.:::::: .:.:..:::..::::..:
KIAA03      RRSLLFSQSPEKFQISSFYTHPGEGKESLSLSPRLECTGAISTHCSFSLLGSSDP
                    10        20        30        40        50     

      150       160       170       180       190       200        
KIAA05 PASASRVAGSTGACHHAHLIFLSFIDTGLTVAQAGLELLASGDPPALAYQNAGIIGMNHC
       :::                                                         
KIAA03 PASQPSEWLGLQFAASGGAHWRISNIGAGLQLPSHHLLRRKILQDSEHTASTRGPMTLDR
          60        70        80        90       100       110     




213 residues in 1 query   sequences
1987292 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:24:07 2008 done: Thu Dec 18 15:24:07 2008
 Total Scan time:  0.280 Total Display time:  0.000

Function used was FASTA [version 34.26.5 April 26, 2007]