# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hg00404.fasta.nr -Q ../query/KIAA0500.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0500, 213 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826238 sequences Expectation_n fit: rho(ln(x))= 4.6274+/-0.000178; mu= 10.5070+/- 0.010 mean_var=59.1548+/-11.575, 0's: 29 Z-trim: 40 B-trim: 26 in 2/65 Lambda= 0.166755 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|9280152|dbj|BAB01630.1| unnamed portein product ( 115) 409 106.0 2.4e-21 gi|10437485|dbj|BAB15056.1| unnamed protein produc ( 127) 409 106.0 2.6e-21 gi|10437569|dbj|BAB15071.1| unnamed protein produc ( 171) 406 105.4 5.3e-21 gi|34526292|dbj|BAC85220.1| unnamed protein produc ( 140) 388 101.0 9.1e-20 gi|7020625|dbj|BAA91205.1| unnamed protein product ( 239) 390 101.7 9.9e-20 gi|119578354|gb|EAW57950.1| hypothetical protein F ( 320) 390 101.8 1.2e-19 gi|34526959|dbj|BAC85304.1| unnamed protein produc ( 137) 384 100.0 1.8e-19 gi|10441877|gb|AAG17216.1|AF217973_1 unknown [Homo ( 130) 382 99.5 2.3e-19 gi|34531772|dbj|BAC86222.1| unnamed protein produc ( 164) 383 99.9 2.4e-19 gi|119628534|gb|EAX08129.1| hCG2038166 [Homo sapie ( 134) 378 98.6 4.7e-19 gi|74750922|sp|Q8N2A0.1|CX062_HUMAN RecName: Full= ( 174) 377 98.4 6.8e-19 gi|119577496|gb|EAW57092.1| hCG1995581 [Homo sapie ( 230) 371 97.1 2.3e-18 gi|222834584|gb|EEE73047.1| predicted protein [Pop ( 100) 366 95.6 2.8e-18 gi|34526288|dbj|BAC85219.1| unnamed protein produc ( 150) 367 96.0 3.2e-18 gi|119631865|gb|EAX11460.1| hCG2038446 [Homo sapie ( 135) 364 95.2 4.9e-18 gi|119601568|gb|EAW81162.1| hCG1814203 [Homo sapie ( 162) 362 94.8 7.8e-18 gi|119578875|gb|EAW58471.1| hCG2033684 [Homo sapie ( 169) 362 94.8 8.1e-18 gi|11493463|gb|AAG35505.1|AF130117_38 PRO2852 [Hom ( 169) 362 94.8 8.1e-18 gi|119588406|gb|EAW68000.1| hypothetical protein F ( 969) 369 97.1 9.7e-18 gi|119588408|gb|EAW68002.1| hypothetical protein F (1301) 369 97.2 1.2e-17 gi|114637314|ref|XP_001163466.1| PREDICTED: hypoth (1301) 369 97.2 1.2e-17 gi|119626996|gb|EAX06591.1| hCG2039110 [Homo sapie ( 103) 352 92.2 2.9e-17 gi|34526231|dbj|BAC85205.1| unnamed protein produc ( 128) 349 91.6 5.7e-17 gi|21758970|dbj|BAC05428.1| unnamed protein produc ( 182) 350 92.0 6.3e-17 gi|119601085|gb|EAW80679.1| hCG1660224, isoform CR ( 131) 345 90.6 1.1e-16 gi|119586601|gb|EAW66197.1| chromosome 14 open rea ( 228) 347 91.3 1.2e-16 gi|90086203|dbj|BAE91654.1| unnamed protein produc ( 115) 343 90.1 1.4e-16 gi|222875348|gb|EEF12479.1| predicted protein [Pop ( 108) 342 89.9 1.6e-16 gi|21757775|dbj|BAC05191.1| unnamed protein produc ( 179) 338 89.1 4.6e-16 gi|119568691|gb|EAW48306.1| hCG2038961 [Homo sapie ( 120) 336 88.5 4.7e-16 gi|78499745|gb|ABB45869.1| Down syndrome encephalo ( 228) 337 88.9 6.6e-16 gi|119613178|gb|EAW92772.1| hCG2038390 [Homo sapie ( 145) 332 87.6 1.1e-15 gi|34526247|dbj|BAC85209.1| unnamed protein produc ( 121) 330 87.0 1.3e-15 gi|119622549|gb|EAX02144.1| hCG1991981 [Homo sapie ( 136) 328 86.6 2e-15 gi|119585041|gb|EAW64637.1| hCG2039009 [Homo sapie ( 120) 325 85.8 3e-15 gi|74762627|sp|Q8WTZ3.1|YS049_HUMAN RecName: Full= ( 238) 325 86.0 5e-15 gi|21753371|dbj|BAC04333.1| unnamed protein produc ( 129) 318 84.1 1e-14 gi|119589359|gb|EAW68953.1| hCG1814039 [Homo sapie ( 110) 317 83.9 1.1e-14 gi|119596034|gb|EAW75628.1| hCG1656811 [Homo sapie ( 106) 315 83.4 1.4e-14 gi|90087000|dbj|BAE91793.1| unnamed protein produc ( 136) 316 83.7 1.5e-14 gi|7959923|gb|AAF71132.1|AF116721_112 PRO2738 [Hom ( 124) 314 83.2 1.9e-14 gi|119625173|gb|EAX04768.1| hCG2039105 [Homo sapie ( 115) 311 82.4 3e-14 gi|90085623|dbj|BAE91552.1| unnamed protein produc ( 114) 310 82.2 3.5e-14 gi|119614186|gb|EAW93780.1| hCG2040564 [Homo sapie ( 108) 309 81.9 3.9e-14 gi|10438620|dbj|BAB15291.1| unnamed protein produc ( 120) 309 82.0 4.3e-14 gi|34527394|dbj|BAC85380.1| unnamed protein produc ( 158) 310 82.3 4.5e-14 gi|119576138|gb|EAW55734.1| hCG2038067 [Homo sapie ( 129) 309 82.0 4.5e-14 gi|119587134|gb|EAW66730.1| hCG1798187 [Homo sapie ( 91) 307 81.4 4.8e-14 gi|33317806|gb|AAQ04815.1|AF461901_1 Unknown [Homo ( 142) 309 82.0 4.9e-14 gi|21752596|dbj|BAC04217.1| unnamed protein produc ( 224) 311 82.6 4.9e-14 >>gi|9280152|dbj|BAB01630.1| unnamed portein product [Ma (115 aa) initn: 408 init1: 248 opt: 409 Z-score: 539.6 bits: 106.0 E(): 2.4e-21 Smith-Waterman score: 409; 60.204% identity (88.776% similar) in 98 aa overlap (115-211:7-104) 90 100 110 120 130 140 KIAA05 CMDFAQVPFPSCADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLG .:: :: :.:::::. ::.: :.:.:.::: gi|928 MIMMIYLFFWRQGLALSPRLKCSGTILAYCNLHLLG 10 20 30 150 160 170 180 190 200 KIAA05 SGNPPASASRVAGSTGACHHAHLIFLSFIDTGLT-VAQAGLELLASGDPPALAYQNAGII :.:: .:::.:::.:.::::. :::. ... :. :::::..::.:.:::.::.:.::: gi|928 SSNPYTSASQVAGTTSACHHTWLIFIFLVEMGFYHVAQAGVKLLSSSDPPTLAFQSAGIT 40 50 60 70 80 90 210 KIAA05 GMNHCAWPSL :..::.:: gi|928 GISHCTWPDYFHLKDALTI 100 110 >>gi|10437485|dbj|BAB15056.1| unnamed protein product [H (127 aa) initn: 382 init1: 236 opt: 409 Z-score: 539.0 bits: 106.0 E(): 2.6e-21 Smith-Waterman score: 409; 55.769% identity (86.538% similar) in 104 aa overlap (111-213:1-104) 90 100 110 120 130 140 KIAA05 VHRLCMDFAQVPFPSCADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSL ... ..: : :::::::: :..:.:::.: gi|104 MKNYYYFLGQGLTLSPRLECSSTISAHCNL 10 20 30 150 160 170 180 190 KIAA05 KLLGSGNPPASASRVAGSTGACHHAHLIFLSFIDTGLT-VAQAGLELLASGDPPALAYQN .::::.: :..:: :::.::.::: :::. ...::. ..:.:::.:.:::::.:: .. gi|104 HLLGSSNSPVAASPVAGTTGTCHHDWLIFVFLVETGFHHIGQTGLEFLTSGDPPTLASKS 40 50 60 70 80 90 200 210 KIAA05 AGIIGMNHCAWPSL ::: :..:::::.. gi|104 AGITGVSHCAWPTFLLNDMRHSFNKNLVIIFYVPAIS 100 110 120 >>gi|10437569|dbj|BAB15071.1| unnamed protein product [H (171 aa) initn: 388 init1: 252 opt: 406 Z-score: 533.3 bits: 105.4 E(): 5.3e-21 Smith-Waterman score: 406; 54.622% identity (77.311% similar) in 119 aa overlap (96-212:34-152) 70 80 90 100 110 120 KIAA05 ISLENSSQQLMEVSPVHRLCMDFAQVPFPSCADTCIFGLHVSTCPLHSDFFF-KRQHLTL :.. ...: . . :.::: :: ::: gi|104 LRKAAAISLLLRNVGLQLATLLMSQKKLGFCGNFLFLNLAIIQTKISSSFFFFLRQSLTL 10 20 30 40 50 60 130 140 150 160 170 180 KIAA05 SPRLEYSGVITAHCSLKLLGSGNPPASASRVAGSTGACHHAHLIFLSFIDTGLT-VAQAG ::::: .:.:.::: :.: :.: :::::.:.: ::. ::: :::. ...::. :.: : gi|104 SPRLECNGAISAHCHLRLPDSSNSPASASQVTGITGSHHHAWLIFVFLVETGFCHVGQDG 70 80 90 100 110 120 190 200 210 KIAA05 LELLASGDPPALAYQNAGIIGMNHCAWPSL ::::.:::::: : :.::: ::.: .::. gi|104 LELLTSGDPPASASQSAGITGMSHHTWPTDLFFKTVLPARLGLWDSSV 130 140 150 160 170 >>gi|34526292|dbj|BAC85220.1| unnamed protein product [H (140 aa) initn: 378 init1: 249 opt: 388 Z-score: 511.1 bits: 101.0 E(): 9.1e-20 Smith-Waterman score: 388; 59.000% identity (84.000% similar) in 100 aa overlap (115-213:23-122) 90 100 110 120 130 140 KIAA05 CMDFAQVPFPSCADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLG :: :: :.: :.:: :.:.:::.:.: : gi|345 MKNNVCKNIPQKWFFFLLLFVCFFVLRQSLALLPKLECRGTISAHCNLHLPG 10 20 30 40 50 150 160 170 180 190 200 KIAA05 SGNPPASASRVAGSTGACHHAHLIFLSFIDTGLT-VAQAGLELLASGDPPALAYQNAGII :.. :::::.:::.::::::: :::. ....:. :.: :::::.:.:::.:: :.::: gi|345 SSDFPASASQVAGTTGACHHAWLIFVFLVEAGFHHVGQDGLELLTSNDPPTLASQSAGIT 60 70 80 90 100 110 210 KIAA05 GMNHCAWPSL :..: :::.. gi|345 GVSHRAWPAVVVKKATLSRLSELKFLLY 120 130 140 >>gi|7020625|dbj|BAA91205.1| unnamed protein product [Ho (239 aa) initn: 384 init1: 258 opt: 390 Z-score: 510.5 bits: 101.7 E(): 9.9e-20 Smith-Waterman score: 390; 63.265% identity (81.633% similar) in 98 aa overlap (115-211:117-214) 90 100 110 120 130 140 KIAA05 CMDFAQVPFPSCADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLG ::: : :::::::: :..:.:::.:.: : gi|702 PCCSSSAWPEGSFRPFQMNLFSFLSFFFLFFFFLRWSLTLSPRLECSSAISAHCNLRLPG 90 100 110 120 130 140 150 160 170 180 190 200 KIAA05 SGNPPASASRVAGSTGACHHAHLIFLSFIDTGLT-VAQAGLELLASGDPPALAYQNAGII :.: :: ::.::: :: ::::. ::. ...::. :.::::::: ::: :: :.:.:::: gi|702 SSNSPALASQVAGITGICHHARQIFVFLVETGFCHVGQAGLELLISGDSPASAFQSAGII 150 160 170 180 190 200 210 KIAA05 GMNHCAWPSL :..: : : gi|702 GVSHRARPGSVFLARSEESLYLRPGQQSQEVKV 210 220 230 >>gi|119578354|gb|EAW57950.1| hypothetical protein FLJ20 (320 aa) initn: 422 init1: 258 opt: 390 Z-score: 508.7 bits: 101.8 E(): 1.2e-19 Smith-Waterman score: 390; 63.265% identity (81.633% similar) in 98 aa overlap (115-211:198-295) 90 100 110 120 130 140 KIAA05 CMDFAQVPFPSCADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLG ::: : :::::::: :..:.:::.:.: : gi|119 PCCSSSAWPEGSFRPFQMNLFSFLSFFFLFFFFLRWSLTLSPRLECSSAISAHCNLRLPG 170 180 190 200 210 220 150 160 170 180 190 200 KIAA05 SGNPPASASRVAGSTGACHHAHLIFLSFIDTGLT-VAQAGLELLASGDPPALAYQNAGII :.: :: ::.::: :: ::::. ::. ...::. :.::::::: ::: :: :.:.:::: gi|119 SSNSPALASQVAGITGICHHARQIFVFLVETGFCHVGQAGLELLISGDSPASAFQSAGII 230 240 250 260 270 280 210 KIAA05 GMNHCAWPSL :..: : : gi|119 GVSHRARPGSVFLARSEESLYLRPGQQSQEVKV 290 300 310 320 >>gi|34526959|dbj|BAC85304.1| unnamed protein product [H (137 aa) initn: 379 init1: 277 opt: 384 Z-score: 506.0 bits: 100.0 E(): 1.8e-19 Smith-Waterman score: 384; 63.000% identity (79.000% similar) in 100 aa overlap (115-212:25-124) 90 100 110 120 130 140 KIAA05 CMDFAQVPFPSCADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLG ::: : :::: ::: ::.: :::.:.::: gi|345 MSNVDLLSVRQMHDWLSPNSVLFFFFFLRWSLTLSSRLECSGAILAHCNLRLLG 10 20 30 40 50 150 160 170 180 190 200 KIAA05 SGNPPASASRVAGSTGACHHAHLIFLSF-IDTGLT-VAQAGLELLASGDPPALAYQNAGI ..:::::::::: ::::::: :::: : .. :. ..::::.::::.: : : :..:: gi|345 PNEPPASASRVAGITGACHHAWLIFLVFLVEMGFRHIGQAGLKLLASSDVPISASQSVGI 60 70 80 90 100 110 210 KIAA05 IGMNHCAWPSL ::.: : :. gi|345 TGMSHHARPAPFFTQVKCRFSEC 120 130 >>gi|10441877|gb|AAG17216.1|AF217973_1 unknown [Homo sap (130 aa) initn: 363 init1: 225 opt: 382 Z-score: 503.7 bits: 99.5 E(): 2.3e-19 Smith-Waterman score: 382; 56.075% identity (79.439% similar) in 107 aa overlap (106-211:20-125) 80 90 100 110 120 130 KIAA05 MEVSPVHRLCMDFAQVPFPSCADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVIT : ::. .: :.. . .:::::: ::.:. gi|104 MEGREVYLWYSVDSRGDFLVFLCPIFFSFSFSEVE-SLSPRLECSGTIS 10 20 30 40 140 150 160 170 180 190 KIAA05 AHCSLKLLGSGNPPASASRVAGSTGACHHAHLIFLSFIDTGLT-VAQAGLELLASGDPPA :::.: ::::. :::::::.: :: ::::.:::. .. . :.:...:::::..::: gi|104 AHCNLCLLGSSYSPASASRVTGITGMCHHAQLIFVFLVKMEFRHVGQTSFELLASSSPPA 50 60 70 80 90 100 200 210 KIAA05 LAYQNAGIIGMNHCAWPSL : :.::: :..::::: gi|104 SASQSAGITGVSHCAWPLAQYL 110 120 130 >>gi|34531772|dbj|BAC86222.1| unnamed protein product [H (164 aa) initn: 376 init1: 268 opt: 383 Z-score: 503.6 bits: 99.9 E(): 2.4e-19 Smith-Waterman score: 383; 61.000% identity (82.000% similar) in 100 aa overlap (115-213:13-112) 90 100 110 120 130 140 KIAA05 CMDFAQVPFPSCADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHCSLKLLG ::: :: :::: :: ::.:.:::.:.: : gi|345 MLLTTLTHFFFFFFFLRQSLTLSAWLECSGTISAHCNLRLPG 10 20 30 40 150 160 170 180 190 200 KIAA05 SGNPPASASRVAGSTGACHHAHLIFLSFIDTGLT-VAQAGLELLASGDPPALAYQNAGII :.: ::::::::: :: ::::.:::. ... :. :..::::::.::.::: : :.::: gi|345 SSNSPASASRVAGITGMCHHARLIFVFLVEMGFHHVGEAGLELLTSGNPPASASQSAGIT 50 60 70 80 90 100 210 KIAA05 GMNHCAWPSL ...: : :.. gi|345 SVSHRARPTVFKSVETSFPLMPCSRADYNSHHAWQPLGPRFRTSLTRFTSPGILRCFPNS 110 120 130 140 150 160 >>gi|119628534|gb|EAX08129.1| hCG2038166 [Homo sapiens] (134 aa) initn: 350 init1: 207 opt: 378 Z-score: 498.3 bits: 98.6 E(): 4.7e-19 Smith-Waterman score: 378; 60.194% identity (79.612% similar) in 103 aa overlap (109-210:29-128) 80 90 100 110 120 130 KIAA05 SPVHRLCMDFAQVPFPSCADTCIFGLHVSTCPLHSDFFFKRQHLTLSPRLEYSGVITAHC ::. : : : :.:::::. :::: ::: gi|119 GYTISIFFKCLFAISIDIYNFFPGVQRFCPI---FCFLRWCLALSPRLKCSGVILAHC 10 20 30 40 50 140 150 160 170 180 190 KIAA05 SLKLLGSGNPPASASRVAGSTGACHHAHLIFLSFIDTGLTVA-QAGLELLASGDPPALAY .:.: ::.: :::.: ::: ::: :.:.:.:. ...::. : ::::..:.::: :::: gi|119 NLHLPGSSNSPASSSPVAGITGAHHQARLFFVFLVETGFHHASQAGLKFLTSGDLPALAS 60 70 80 90 100 110 200 210 KIAA05 QNAGIIGMNHCAWPSL ::::: :..:::: gi|119 QNAGITGVSHCAWRILPTF 120 130 213 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 02:00:54 2009 done: Thu Mar 5 02:06:32 2009 Total Scan time: 1214.130 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]