# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/hh00207.fasta.nr -Q ../query/KIAA0508.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0508, 253 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826367 sequences Expectation_n fit: rho(ln(x))= 4.8336+/-0.000186; mu= 10.3691+/- 0.010 mean_var=72.4107+/-14.037, 0's: 31 Z-trim: 33 B-trim: 2097 in 2/63 Lambda= 0.150721 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|119576523|gb|EAW56119.1| hCG2033649 [Homo sapie ( 172) 213 54.9 1e-05 gi|158598137|gb|EDP36098.1| Histidine-rich glycopr ( 119) 173 46.1 0.0032 gi|149032451|gb|EDL87342.1| rCG39143 [Rattus norve ( 142) 170 45.5 0.0058 >>gi|119576523|gb|EAW56119.1| hCG2033649 [Homo sapiens] (172 aa) initn: 210 init1: 95 opt: 213 Z-score: 258.9 bits: 54.9 E(): 1e-05 Smith-Waterman score: 213; 48.315% identity (65.169% similar) in 89 aa overlap (2-80:37-124) 10 20 KIAA05 AHTPAL-THTPALTHS-GPTDIRAHTHQHRG :: :: .:::::::: :: ::::.: : gi|119 QPCGTVSPIKPLFVPSFGYIFFSSVKMECTHTSALWAHTPALTHSSGPMGTRAHTRQSCG 10 20 30 40 50 60 30 40 50 60 70 80 KIAA05 RTHLHSTHSSGPTGRCTHMHQH---PWTRARTHQHPWA-----YMDAHISTMGTHTCTHS ::::: . : .. .: .:: ..::: : . :. .::::.:.::::. gi|119 CTHLHSHIHQDPWAH-VHTRQHRERTHLHSRTHLHSRTQDRRTYVHTHISTVGAHTCTQR 70 80 90 100 110 120 90 100 110 120 130 140 KIAA05 RWLRLAGCLLRPRVSKSGGRHLGWGHSMVLRSPVSPGPTCSQPWVPKCCSHWSLCPTHHG gi|119 TRQDPRADVHTCTSTRGHVHAHISTHGHTWMHTSVPWAHTHAPTPDG 130 140 150 160 170 >>gi|158598137|gb|EDP36098.1| Histidine-rich glycoprotei (119 aa) initn: 49 init1: 49 opt: 173 Z-score: 214.0 bits: 46.1 E(): 0.0032 Smith-Waterman score: 173; 37.895% identity (57.895% similar) in 95 aa overlap (2-95:26-116) 10 20 30 KIAA05 AHTPALTHTPALTHSGPTDIRAHTHQHRGRTHLHST :: . ::: . ::. : ..::: : .:: : : gi|158 MITHTHTHTHTHTHTHTHTHTHTHTHTHSHTHTHTHTHTH-THTHTHTHTHT-HTHTH-T 10 20 30 40 50 40 50 60 70 80 90 KIAA05 HSSGPTGRCTHMHQHPWTRARTHQHPWAYMDAHISTMGTHTCTHSRWLRLA-GCLLRPRV :. : :: : : :...:: : .. .: : ::: ::.. .: :: . .. gi|158 HTHTHTHTHTHTHTHTHTHTHTHTHTHTHTHTHTHTH-THTHTHTHTIRENRKCLHQGKI 60 70 80 90 100 110 100 110 120 130 140 150 KIAA05 SKSGGRHLGWGHSMVLRSPVSPGPTCSQPWVPKCCSHWSLCPTHHGQGCLNRAESRVMQG gi|158 IQP >>gi|149032451|gb|EDL87342.1| rCG39143 [Rattus norvegicu (142 aa) initn: 361 init1: 115 opt: 170 Z-score: 209.4 bits: 45.5 E(): 0.0058 Smith-Waterman score: 191; 47.500% identity (62.500% similar) in 80 aa overlap (2-80:47-117) 10 20 30 KIAA05 AHTPALTHTPALTHSGPTDIRAHTHQH-RGR :: ::::: . :: : . :::.: .. gi|149 HIHTHTHIHTHTYRHTHMHIHIHTHTHTHMHTHALTHTHTYTH---IDTHMHTHMHTHAL 20 30 40 50 60 70 40 50 60 70 80 90 KIAA05 THLHSTHSSGPTGRCTHMHQHPWTRARTHQHPWAYMDAHISTMGTHTCTHSRWLRLAGCL :: : :.. : ::::: : ::.:: : ..: .:: . ::::: gi|149 THTH-TYTHIDTHTCTHMHTH--IRAHTHVH--THMHTHIR-IHHHTCTHMHIHIHMCTH 80 90 100 110 120 100 110 120 130 140 150 KIAA05 LRPRVSKSGGRHLGWGHSMVLRSPVSPGPTCSQPWVPKCCSHWSLCPTHHGQGCLNRAES gi|149 THIFINACIHAFLFV 130 140 253 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Thu Mar 5 02:50:43 2009 done: Thu Mar 5 02:56:03 2009 Total Scan time: 1295.820 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]