hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05053756/chunk_1/iprscan-20080502-05053756.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0511 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00044 457.4 7e-133 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00044 1/2 59 261 .. 1 231 [] 219.5 3e-61 SM00044 2/2 672 891 .. 1 231 [] 238.0 8.1e-67 Alignments of top-scoring domains: SM00044: domain 1 of 2, from 59 to 261: score 219.5, E = 3e-61 *->eekkktdrLLyqlLPasvAeslkegr............epvpaesyd e ++ + L ++LP++vA+++ +++++++++++ +++++ +++ KIAA0511 59 EQSQQQENLMLSILPKHVADEMLKDMkkdesqkdqqqfNTMYMYRHE 105 sVTilFsDIvgFTslcsastPeqvvtlLndlysrFDriidrhggsrvvvY +V+ilF+DIvgFT l+sa++++++v+lLn+l+ rFD++ ++++ KIAA0511 106 NVSILFADIVGFTQLSSACSAQELVKLLNELFARFDKLAAKYH-----QL 150 KVeTiGDaYMVvsGlPeeaetsaesklkddglteawcfavqhaeliadea ++ +GD+Y++ +GlP +e +ha++ ++++ KIAA0511 151 RIKILGDCYYCICGLPDYRE--------------------DHAVCSILMG 180 LdmveslktvkvphrkgelpgeglrvRiGiHtGpVvaGVvGlrmpRYclF L mve++ v + +g+ +R+G+HtG+V+ GV G++++ Y+++ KIAA0511 181 LAMVEAISYVREK------TKTGVDMRVGVHTGTVLGGVLGQKRWQYDVW 224 GdTVNlASRmEStgdpgqIqvSeetyslLqlgqaerrekggfefee<-* +V++A++mE+ g pg++++S++t ++L kg f++e+ KIAA0511 225 STDVTVANKMEAGGIPGRVHISQSTMDCL---------KGEFDVEP 261 SM00044: domain 2 of 2, from 672 to 891: score 238.0, E = 8.1e-67 *->eekkktdrLLyqlLPasvAeslkegr...epvpaesydsVTilFsDI e++++++ L++++LP++vA++ ++++e+ ++++yd+++++F+ + KIAA0511 672 EMRRWNEALVTNMLPEHVARHFLGSKkrdEELYSQTYDEIGVMFASL 718 vgFTslc....sastPeqvvtlLndlysrFDriidrhggsrvvvYKVeTi ++F +++++++ + ++ ++Ln++ s FD+++d+ + +r v +K++Ti KIAA0511 719 PNFADFYteesINNGGIECLRFLNEIISDFDSLLDNPK-FR-VITKIKTI 766 GDaYMVvsGlPeeaets.ae.s.k.lkddglteawcfavqhaeliadeaL G +YM++sG++++ t+++ +s+k+ k + +++qh + ad+aL KIAA0511 767 GSTYMAASGVTPDVNTNgFAsSnKeDK------SERERWQHLADLADFAL 810 dmveslktvkvphrkgelpgeglrvRiGiHtGpVvaGVvGlrmpRYclFG m ++l++ +++ +++++++RiG++ G V+aGV+G+r+p+Y+++G KIAA0511 811 AMKDTLTNINNQ------SFNNFMLRIGMNKGGVLAGVIGARKPHYDIWG 854 dTVNlASRmEStgdpgqIqvSeetyslLqlgqaerrekggfefee<-* +TVN+ASRmEStg++g Iqv eet+ +L + +gf+f + KIAA0511 855 NTVNVASRMESTGVMGNIQVVEETQVIL--------REYGFRFVR 891 //