# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hf00239.fasta.huge -Q ../query/KIAA0512.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0512, 710 aa vs ./tmplib.23663 library 1986795 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 11.1602+/-0.0105; mu= -14.9942+/- 0.707 mean_var=482.5566+/-114.040, 0's: 0 Z-trim: 7 B-trim: 0 in 0/40 Lambda= 0.058385 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0443 ( 1404 res) pj00552 (1404) 362 45.7 3.5e-05 KIAA1701 ( 570 res) fj15383 ( 570) 327 42.3 0.00015 >>KIAA0443 ( 1404 res) pj00552 (1404 aa) initn: 362 init1: 321 opt: 362 Z-score: 184.8 bits: 45.7 E(): 3.5e-05 Smith-Waterman score: 362; 28.436% identity (69.194% similar) in 211 aa overlap (461-670:1160-1370) 440 450 460 470 480 490 KIAA05 DSEPETQRRGRGRRPVAMQKRPFPYEIDEILGVRDLRKVLALLQKSDDPFIQQVALLTLS .: ......: :..: ::::.... .... KIAA04 SVQEIREHLRAKESTEPESSSCNCIQCELKIGSEEFEELLLLMEKIRDPFIHEISKIAMG 1130 1140 1150 1160 1170 1180 500 510 520 530 540 550 KIAA05 NNANYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQGRLQVYMNKV . . ... :: : . .: ...: . ... . : : .. : : . .:.:. :: KIAA04 MRSASQFTRDFIRDSGVVSLIETLLNYPSSRVRTSFLENMIRMAPPYPNLNIIQTYICKV 1190 1200 1210 1220 1230 1240 560 570 580 590 600 610 KIAA05 MDDIMASNLNSAVQVVGLKFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIKVEILKIL .. .: ...: :. :.... ..: :.::. :..: ...:. ::. :..: . ..::.: KIAA04 CEETLAYSVDSPEQLSGIRMIRHLTTTTDYHTLVANYMSGFLSLLATGNAKTRFHVLKML 1250 1260 1270 1280 1290 1300 620 630 640 650 660 KIAA05 SNFAENPDMLKKLLSTQVPASFSSLYNSYVESEILINALTLFEIIYDNLRAE-VFNYREF :..:: : :.:::... . : .:.: .. . .:..:: : .:.. : ::. .: KIAA04 LNLSENLFMTKELLSAEAVSEFIGLFNREETNDNIQIVLAIFENIGNNIKKETVFSDDDF 1310 1320 1330 1340 1350 1360 670 680 690 700 710 KIAA05 NKGSLFYLCTTSGVCVKKIRALANHHDLLVKVKVIKLVNKF : KIAA04 NIEPLISAFHKVEKFAKELQGKTDNQNDPEGDQEN 1370 1380 1390 1400 >>KIAA1701 ( 570 res) fj15383 (570 aa) initn: 203 init1: 147 opt: 327 Z-score: 173.4 bits: 42.3 E(): 0.00015 Smith-Waterman score: 335; 22.262% identity (53.321% similar) in 557 aa overlap (118-660:28-541) 90 100 110 120 130 140 KIAA05 VAAGIVIGAGAWYCVYKYTRGRDQTKKRMAKPKNRAVAGTGARARAGLRAGFTIDLGSGF : :.:: : : .: .:: . . KIAA17 DFDLGHIENQGQDWTGPYNWASTMAGTKNKTRAQAKTEKKAAIQAKAGAEREATGVV 10 20 30 40 50 150 160 170 180 190 200 KIAA05 SPPTPVRAEAEDRAQDEASALDTVGAEAVAPAASSAEAQSGAGSQAQEADGAGVGPKAES : . .::.:. .. ....:. . .::. ::.. :: :. ::. KIAA17 RPVAKTRAKAKAKTGSKTDAVAEM--KAVSKNKVVAETKEGALSE----------PKT-- 60 70 80 90 100 210 220 230 240 250 260 KIAA05 VVGAAMASAIAPPPGVTEALGAAEAPAMAGAPKVAEAPREAETSR---AAVPPGTVVPTE .: ::.. ..: : .:. ... ::. : .:: . . :. :. KIAA17 -LGKAMGD-FTPKAG-NESTSST-CKNEAGTDAWFWAGEEATINSWFWNGEEAGNSFSTK 110 120 130 140 150 270 280 290 300 310 320 KIAA05 AAAPTEVTEGPGVAAPTKVAEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPR : :. : : : : . .: .:: . : : : . .: KIAA17 NDKP-EI--GAQVCAEELEPAAGADCKPRSGAEEEEEENVIGNWFWEGDDTSFDPNPKPV 160 170 180 190 200 210 330 340 350 360 370 KIAA05 TAVV---PGTSAAKKATPG--AHTGAIPKATSATGAVPKGGGKGVTRSRNGGKGKGKKSK . .: : .: : ... :.: ..: :: : .:. KIAA17 SRIVKPQPVYEINEKNRPKDWSEVTIWPNAPAVTPAV-----------------LGFRSQ 220 230 240 250 380 390 400 410 420 430 KIAA05 VEVDELGMGFRPGDGAAAAAAASANGGQAFLAEVPDSEEGESGWTDTESDSDSEPETQRR . . . :. . :.: .: . . : :. . . : ::.: : KIAA17 APSE----ASPPSYIVLASAEENACSLPVATACRPSRNTRSCSQPIPECRFDSDPCIQTI 260 270 280 290 300 310 440 450 460 470 480 490 KIAA05 GRGRRPVAMQK----RPF--PYEIDEILGVRDLRKVLALLQKSDDPFIQQVALLTLSNNA . :: . ... .:: : ... . ....:...::... ::.:...: .... . KIAA17 DEIRRQIRIREVNGIKPFACPCKMECYMDSEEFEKLVSLLKSTTDPLIHKIARIAMGVHN 320 330 340 350 360 370 500 510 520 530 540 550 KIAA05 NYSCNQETIRKLGGLPIIANMINKTDPHIKEKALMAMNNLSENYENQGRLQVYMNKVMDD . :: : ..: . .: .... .:....:.....: : . : : ......... . KIAA17 VHPFAQEFINEVGVVTLIESLLSFPSPEMRKKTVITLNPPSGD-ERQRKIELHVKHMCKE 380 390 400 410 420 430 560 570 580 590 600 610 KIAA05 IMASNLNSAVQVVGLKFLTNMTITNDYQHLLVNSIANFFRLLSQGGGKIKVEILKILSNF :. ::: : :::.: ..: ......: ....:.:::.:. : . .::.: :. KIAA17 TMSFPLNSPGQQSGLKILGQLTTDFVHHYIVANYFSELFHLLSSGNCKTRNLVLKLLLNM 440 450 460 470 480 490 620 630 640 650 660 670 KIAA05 AENPDMLKKLLSTQVPASFSSLYNSYVESEILINALTLFEIIYDNLRAEVFNYREFNKGS .::: . ... .. :... ..:. . :......: : ...: KIAA17 SENPTAARDMINMKALAALKLIFNQKEAKANLVSGVAIFINIKEHIRKGSIVVVDHLSYN 500 510 520 530 540 550 680 690 700 710 KIAA05 LFYLCTTSGVCVKKIRALANHHDLLVKVKVIKLVNKF KIAA17 TLMAIFREVKEIIETM 560 570 710 residues in 1 query sequences 1986795 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:05:07 2008 done: Thu Dec 18 15:05:08 2008 Total Scan time: 0.560 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]