hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05071492/chunk_1/iprscan-20080502-05071492.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0512 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00185 25.3 0.0087 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00185 1/1 494 535 .. 1 38 [] 25.3 0.0087 Alignments of top-scoring domains: SM00185: domain 1 of 1, from 494 to 535: score 25.3, E = 0.0087 *->nde.nkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-* n n ++++++Gglp++ ++++++d+++++ A++a Nl++ KIAA0512 494 NYScNQETIRKLGGLPIIANMInktDPHIKEKALMAMNNLSE 535 //