hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-05185766/chunk_1/iprscan-20080502-05185766.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0519 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF09258.1.fs EXTL2, alpha-1,4-N-acetylhexosaminyltransfe 534.6 5.1e-167 1 PF09258.1.ls EXTL2, alpha-1,4-N-acetylhexosaminyltransfe 536.5 2.5e-158 1 PF03016.6.ls Exostosin family 333.5 3.3e-97 1 PF03016.6.fs Exostosin family 331.7 1.1e-96 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03016.6.fs 1/1 208 524 .. 1 407 [] 331.7 1.1e-96 PF03016.6.ls 1/1 208 524 .. 1 407 [] 333.5 3.3e-97 PF09258.1.fs 1/1 675 916 .. 1 279 [] 534.6 5.1e-167 PF09258.1.ls 1/1 675 916 .. 1 279 [] 536.5 2.5e-158 Alignments of top-scoring domains: PF03016.6.fs: domain 1 of 1, from 208 to 524: score 331.7, E = 1.1e-96 *->VYvYdLPsrFnfdllencssisewieDmCpyiaNsGlgPpiknvevk VYvYd +++F+f+ + + ++++++ +++aN+ KIAA0519 208 VYVYD-SDQFVFGSYLDPLVKQAFQA---TARANV------------ 238 YPgglhrqhsswYatnqflleveiFhekmlsssyrcrTkDPseAdlffVP ++T++ + A+l++++ KIAA0519 239 -----------------------------------YVTENADIACLYVIL 253 fyasldllrllgnpinaknsaeksssslrdllqeelvkwlksyppyWnRs ++ +++ + l+ ++el+k+l+s+p +W R+ KIAA0519 254 VG-EMQEPVVLR--------------------PAELEKQLYSLP-HW-RT 280 sGrDHvivaghpggvkdfrrlttnkldwgtsllllsessnlTmLsiReee +G++Hvi++++ r+++t++l +++s +++++++ T++++ KIAA0519 281 DGHNHVIINLS-------RKSDTQNLLYNVSTGRAMVAQS-TFYTV---- 318 sfrpgkDvaipPyptyfhPrslgeivswqgngirpekRkyLlfFaGarrp ++rpg+D++++P++ ++++e++++++++++p+kRkyL++F+G++ + KIAA0519 319 QYRPGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGEKIE 363 klggsiprnlesgliRgelidllksskkvclflevda.kq.q.l.eltck +l++s +++++++++++++ ++++++ + +++v+++k++q l e+tck KIAA0519 364 SLRSSLQEARSFEEEMEGDPPADYDDRIIATLKAVQDsKLdQvLvEFTCK 413 Nq.kqQDgrCetgivncygplsymelmrnSkFCLql.PpGdt.....pts Nq+k ++++t++ c++++++ el++ S+F L+++P++ + ++ ++ KIAA0519 414 NQpK---PSLPTEWALCGEREDRLELLKLSTFALIItPGDPRlvissGCA 460 pRlfDaIlsGCIPViisDgSAYiqLPFedvidwskfSVfvpekdvlergv Rlf+a+ G++PV++ ++ qLP++d+++w++++++vp+ +v+e KIAA0519 461 TRLFEALEVGAVPVVLGEQ---VQLPYQDMLQWNEAALVVPKPRVTE--- 504 slkeiLrsIpeervlemReqv<-* ++++Lrs +++++l+mR+q+ KIAA0519 505 -VHFLLRSLSDSDLLAMRRQG 524 PF03016.6.ls: domain 1 of 1, from 208 to 524: score 333.5, E = 3.3e-97 *->VYvYdLPsrFnfdllencssisewieDmCpyiaNsGlgPpiknvevk VYvYd +++F+f+ + + ++++++ +++aN+ KIAA0519 208 VYVYD-SDQFVFGSYLDPLVKQAFQA---TARANV------------ 238 YPgglhrqhsswYatnqflleveiFhekmlsssyrcrTkDPseAdlffVP ++T++ + A+l++++ KIAA0519 239 -----------------------------------YVTENADIACLYVIL 253 fyasldllrllgnpinaknsaeksssslrdllqeelvkwlksyppyWnRs ++ +++ + l+ ++el+k+l+s+p +W R+ KIAA0519 254 VG-EMQEPVVLR--------------------PAELEKQLYSLP-HW-RT 280 sGrDHvivaghpggvkdfrrlttnkldwgtsllllsessnlTmLsiReee +G++Hvi++++ r+++t++l +++s +++++++ T++++ KIAA0519 281 DGHNHVIINLS-------RKSDTQNLLYNVSTGRAMVAQS-TFYTV---- 318 sfrpgkDvaipPyptyfhPrslgeivswqgngirpekRkyLlfFaGarrp ++rpg+D++++P++ ++++e++++++++++p+kRkyL++F+G++ + KIAA0519 319 QYRPGFDLVVSPLV-----HAMSEPNFMEIPPQVPVKRKYLFTFQGEKIE 363 klggsiprnlesgliRgelidllksskkvclflevda.kq.q.l.eltck +l++s +++++++++++++ ++++++ + +++v+++k++q l e+tck KIAA0519 364 SLRSSLQEARSFEEEMEGDPPADYDDRIIATLKAVQDsKLdQvLvEFTCK 413 Nq.kqQDgrCetgivncygplsymelmrnSkFCLql.PpGdt.....pts Nq+k ++++t++ c++++++ el++ S+F L+++P++ + ++ ++ KIAA0519 414 NQpK---PSLPTEWALCGEREDRLELLKLSTFALIItPGDPRlvissGCA 460 pRlfDaIlsGCIPViisDgSAYiqLPFedvidwskfSVfvpekdvlergv Rlf+a+ G++PV++ ++ qLP++d+++w++++++vp+ +v+e KIAA0519 461 TRLFEALEVGAVPVVLGEQ---VQLPYQDMLQWNEAALVVPKPRVTE--- 504 slkeiLrsIpeervlemReqv<-* ++++Lrs +++++l+mR+q+ KIAA0519 505 -VHFLLRSLSDSDLLAMRRQG 524 PF09258.1.fs: domain 1 of 1, from 675 to 916: score 534.6, E = 5.1e-167 *->FTavilTvSplysryqpLlklfvqhylskspslseIvVVWNnpekpp FT+v+lT y+r+++L+++ ++++ +++p+l+++vVVWN+ +k p KIAA0519 675 FTVVMLT----YEREEVLMNS-LERL-NGLPYLNKVVVVWNS-PKLP 714 PslsrWlqNlekypdtsVPvrvirgkenSLNnRFlPdpeIeTeAVLslDD ++ W pd++VP++v+r+++nSLNnRFlP++eIeTeA+Ls+DD KIAA0519 715 SEDLLW-------PDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDD 757 DiilsttdeleFAFrVWRsfGPdRiVGfppRsWHfwDpsgyrawgYtskw D++l++ de++F+FrVWR++ +dRiVGfp+R+ H+wD ++++ w Y+s+ KIAA0519 758 DAHLRH-DEIMFGFRVWREA-RDRIVGFPGRY-HAWDIPHQS-WLYNSN- 802 wsvwwtneYSMVLTGAAFydHryYlylYtsedslpksiRdiVDenfNCED +++e+SMVLTGAAF+ H+yY ylY++ ++p++iRd+VDe+ NCED KIAA0519 803 ----YSCELSMVLTGAAFF-HKYYAYLYSY--VMPQAIRDMVDEYINCED 845 IlMNFLvAnvTrkpPIkVtagrqrWkkykeiectqvsgvagissdpeHfr I+MNFLv+++TrkpPIkVt +r +++++++c+q ++s+d++Hf+ KIAA0519 846 IAMNFLVSHITRKPPIKVT---SR-WTFRCPGCPQ-----ALSHDDSHFH 886 qRskClnkFsaifGymPLvysqfraVddpvlf<-* +R+kC+n+F++++GymPL+y+qfr+ d+vlf KIAA0519 887 ERHKCINFFVKVYGYMPLLYTQFRV--DSVLF 916 PF09258.1.ls: domain 1 of 1, from 675 to 916: score 536.5, E = 2.5e-158 *->FTavilTvSplysryqpLlklfvqhylskspslseIvVVWNnpekpp FT+v+lT y+r+++L+++ ++++ +++p+l+++vVVWN+ +k p KIAA0519 675 FTVVMLT----YEREEVLMNS-LERL-NGLPYLNKVVVVWNS-PKLP 714 PslsrWlqNlekypdtsVPvrvirgkenSLNnRFlPdpeIeTeAVLslDD ++ W pd++VP++v+r+++nSLNnRFlP++eIeTeA+Ls+DD KIAA0519 715 SEDLLW-------PDIGVPIMVVRTEKNSLNNRFLPWNEIETEAILSIDD 757 DiilsttdeleFAFrVWRsfGPdRiVGfppRsWHfwDpsgyrawgYtskw D++l++ de++F+FrVWR++ +dRiVGfp+R+ H+wD ++++ w Y+s+ KIAA0519 758 DAHLRH-DEIMFGFRVWREA-RDRIVGFPGRY-HAWDIPHQS-WLYNSN- 802 wsvwwtneYSMVLTGAAFydHryYlylYtsedslpksiRdiVDenfNCED +++e+SMVLTGAAF+ H+yY ylY++ ++p++iRd+VDe+ NCED KIAA0519 803 ----YSCELSMVLTGAAFF-HKYYAYLYSY--VMPQAIRDMVDEYINCED 845 IlMNFLvAnvTrkpPIkVtagrqrWkkykeiectqvsgvagissdpeHfr I+MNFLv+++TrkpPIkVt +r +++++++c+q ++s+d++Hf+ KIAA0519 846 IAMNFLVSHITRKPPIKVT---SR-WTFRCPGCPQ-----ALSHDDSHFH 886 qRskClnkFsaifGymPLvysqfraVddpvlf<-* +R+kC+n+F++++GymPL+y+qfr+ d+vlf KIAA0519 887 ERHKCINFFVKVYGYMPLLYTQFRV--DSVLF 916 //