# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg01394.fasta.huge -Q ../query/KIAA0523.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0523, 468 aa
 vs ./tmplib.23663 library

1987037 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 3.5046+/-0.00437; mu= 22.1439+/- 0.299
 mean_var=68.3984+/-15.778, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.155078

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0789  ( 620 res)   pj01253                     ( 620) 1870 427.4 1.3e-120


>>KIAA0789  ( 620 res)   pj01253                          (620 aa)
 initn: 1184 init1: 1184 opt: 1870  Z-score: 2257.1  bits: 427.4 E(): 1.3e-120
Smith-Waterman score: 1870;  56.512% identity (81.457% similar) in 453 aa overlap (22-468:169-620)

                        10        20        30        40        50 
KIAA05          ELRQLRRRWFHHFMSDSQGPPALGPEAARPAIHSRGTYIGCFSDDGHERTL
                                     ::  ...:   . :. ::::. :: . :.:
KIAA07 SIARRYGPWFKGKDGNERAKLGDYGGAWSRALKGRVVREKEEERAKYIGCYLDDTQSRAL
      140       150       160       170       180       190        

              60        70        80        90       100       110 
KIAA05 KGAVFYDLRKMTVSHCQDACAERSYVYAGLEAGAECYCGNRLPAVSVGLEECNHECKGEK
       .:. :.: .:::. .::: ::::.:.:.::: :::::::... :..:.  ::. :::::.
KIAA07 RGVSFFDYKKMTIFRCQDNCAERGYLYGGLEFGAECYCGHKIQATNVSEAECDMECKGER
      200       210       220       230       240       250        

             120       130       140       150       160       170 
KIAA05 GSVCGAVDRLSVYRVDELQPGSRKRRTATYRGCFRLPENITHAFPSSLIQANVTVGTCSG
       :::::...::::::..  : ..:.  .:..::::: :.:.. :.: .  . :..:  :  
KIAA07 GSVCGGANRLSVYRLQLAQESARRYGSAVFRGCFRRPDNLSLALPVTAAMLNMSVDKCVD
      260       270       280       290       300       310        

             180       190       200       210       220           
KIAA05 FCSQKEFPLAILRGWECYCAYPTPRFNLRDAMDSSVCGQDPEAQRLAEYCE------VYQ
       ::..::.::: : :  :.:..:: :: :.:  : ..:.:   :... : :       :::
KIAA07 FCTEKEYPLAALAGTACHCGFPTTRFPLHDREDEQLCAQKCSAEEF-ESCGTPSYFIVYQ
      320       330       340       350       360        370       

         230       240       250       260       270       280     
KIAA05 TPVQDTRCTDRRFLPNKSKVFVALSSFPGAGNTWARHLIEHATGFYTGSYYFDGTLYNKG
       : :::.:: ::::::.::: ..::.::::::::::::::: :::::::::::::.:::::
KIAA07 TQVQDNRCMDRRFLPGKSKQLIALASFPGAGNTWARHLIELATGFYTGSYYFDGSLYNKG
       380       390       400       410       420       430       

         290       300       310       320       330       340     
KIAA05 FKGEKDHWRSRRTICVKTHESGRREIEMFDSAILLIRNPYRSLVAEFNRKCAGHLGYAAD
       ::::.::::: ::::.::::::..::: ::.:::::::::..:.:::::: .::.:.:: 
KIAA07 FKGERDHWRSGRTICIKTHESGQKEIEAFDAAILLIRNPYKALMAEFNRKYGGHIGFAAH
       440       450       460       470       480       490       

         350       360       370       380       390       400     
KIAA05 RNWKSKEWPDFVNSYASWWSSHVLDWLKYGKRLLVVHYEELRRSLVPTLREMVAFLNVSV
        .::.::::.:: .:: ::..:.:::::.::..::::.:.:...:   : .::..:.:.:
KIAA07 AHWKGKEWPEFVRNYAPWWATHTLDWLKFGKKVLVVHFEDLKQDLFVQLGRMVSLLGVAV
       500       510       520       530       540       550       

         410       420       430       440       450       460     
KIAA05 SEERLLCVENNKEGSFRRRGRRSHDPEPFTPEMKDLINGYIRTVDQALRDHNWTGLPREY
        :.::::::..:.:.:.: : :. . .:.: .:.  :..::. :: ::. .: ::.: .:
KIAA07 REDRLLCVESQKDGNFKRSGLRKLEYDPYTADMQKTISAYIKMVDAALKGRNLTGVPDDY
       560       570       580       590       600       610       

          
KIAA05 VPR
        ::
KIAA07 YPR
       620




468 residues in 1 query   sequences
1987037 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:05:32 2008 done: Thu Dec 18 15:05:33 2008
 Total Scan time:  0.420 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]