HUGE

Gene/Protein Characteristic Table for KIAA0527

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07030
Accession No. :	AB011099
Description :	Sushi domain-containing protein 5.
HUGO Gene Name :	sushi domain containing 5 (SUSD5)
Clone Name :	hg02246 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5005 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2697 bp

Genome contig ID gi89161205r_33066541
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
CTTCTGAGATATTTAAAATAAATAATTATTGCCCC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACAGTTGCTGAATGTATTTTATTTCTAGGCTACTGCACCAAGGTTTAAA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 3 r 33166541 33235711 5 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 768 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001173642	0	98.6	sushi domain co...	Pan troglodytes
XP_001098156	0	94.4	hypothetical pr...	Macaca mulatta
BAG58668	1.1e-213	100.0	unnamed protein...	Homo sapiens
O60279	9.2e-213	99.5	Sushi domain-co...	Homo sapiens
EAW64451	8.1e-191	95.5	hCG20070 [Homo ...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000538 177 272 PF00193 Link

HMMSmart IPR000538 176 273 SM00445 Link

ProfileScan IPR000538 178 273 PS50963 Link

IPR000436 277 338 PS50923 Sushi/SCR/CCP

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000538	177	272	PF00193	Link
HMMSmart	IPR000538	176	273	SM00445	Link
ProfileScan	IPR000538	178	273	PS50963	Link
IPR000436	277	338	PS50923	Sushi/SCR/CCP

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 710 SRGPVIATIVTVLCLLLLLAGVG 732 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	710	SRGPVIATIVTVLCLLLLLAGVG	732	PRIMARY	23

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: CGCAACATGTTTTCTACCCTG

Primer_r
: TCTTTGATTATGCTGCCTCTC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 3

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: CGCAACATGTTTTCTACCCTG
Primer_r	: TCTTTGATTATGCTGCCTCTC
PCR product length	: 93 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	2697 bp
Genome contig ID	gi89161205r_33066541
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- CTTCTGAGATATTTAAAATAAATAATTATTGCCCC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AACAGTTGCTGAATGTATTTTATTTCTAGGCTACTGCACCAAGGTTTAAA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	3	r	33166541	33235711	5	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0527

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information