# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg03377.fasta.huge -Q ../query/KIAA0532.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0532, 1637 aa vs ./tmplib.23663 library 1985868 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 5.1483+/-0.00499; mu= 16.1806+/- 0.341 mean_var=84.3051+/-19.410, 0's: 0 Z-trim: 2 B-trim: 2 in 1/39 Lambda= 0.139684 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0986 ( 1458 res) hj08124 (1458) 308 73.3 4.3e-13 KIAA0453 ( 3209 res) ff02431 (3209) 186 49.0 1.9e-05 >>KIAA0986 ( 1458 res) hj08124 (1458 aa) initn: 370 init1: 282 opt: 308 Z-score: 327.0 bits: 73.3 E(): 4.3e-13 Smith-Waterman score: 382; 28.793% identity (60.681% similar) in 323 aa overlap (1133-1452:1107-1400) 1110 1120 1130 1140 1150 1160 KIAA05 LISNKELEEYKEKCFIKLCITLNEGKSILCDINEFSFELKPARLYVEDTFVYYIKTLFDT ::. :. : : : : :... : .:.. KIAA09 RLDLGFIYALTDLMTEAEVTENTEVELFHKDIEAFKEEYKTASL-VDQSQV----SLYE- 1080 1090 1100 1110 1120 1130 1170 1180 1190 1200 1210 1220 KIAA05 YLPNSRLAGH-STHLSGGKQVLPMQVTQHARALVNPVKLRKLVIQPVNLLVSIHASLKLY :. : . : :. ::.:.. . ... .:. ::. .: :: :: :.: KIAA09 YFHISPIKLHLSVSLSSGRE--EAKDSKQNGGLI-PVHSLNL------LLKSIGATL--- 1140 1150 1160 1170 1230 1240 1250 1260 1270 KIAA05 IASDHTPLSFSV--FERGPIFTTARQLVHALAMHYAAGALFRAGWVVGSLDILGSPASLV .: . :.. :: . : :. .: . ::. :. . .. .::.::.: .:. KIAA09 --TDVQDVVFKLAFFELNYQFHTTSDLQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLI 1180 1190 1200 1210 1220 1230 1280 1290 1300 1310 1320 1330 KIAA05 RSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSITNLATSLARNMD : ...:: :: ::.: .:: :: :.. : ..: : . .... ..:... KIAA09 REFSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVA 1240 1250 1260 1270 1280 1290 1340 1350 1360 1370 1380 1390 KIAA05 RLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQPMQNFQKTSEAQ ...::.. ....: . : .. ::. .: . : .....:.::: .:... :: KIAA09 AMTMDEDYQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQK----- 1300 1310 1320 1330 1340 1350 1400 1410 1420 1430 1440 1450 KIAA05 ASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQLPKQRHQPSDLH .: : : ..:::::..:. ..: :: ...:.: :: ... :.. . : KIAA09 --GG--AAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNE 1360 1370 1380 1390 1400 1460 1470 1480 1490 1500 1510 KIAA05 ADQAPNSHVKYVWKMLQSLGRPEVHMALDVVLVRGSGQEHEGCLLLTSEVLFVVSVSEDT KIAA09 DGVIRPYRLRDGTGNQMLQKIQFYREWIMTHSSSSDDDDDDDDDDESDLNH 1410 1420 1430 1440 1450 >>KIAA0453 ( 3209 res) ff02431 (3209 aa) initn: 119 init1: 119 opt: 186 Z-score: 189.7 bits: 49.0 E(): 1.9e-05 Smith-Waterman score: 251; 21.662% identity (56.927% similar) in 397 aa overlap (1060-1454:2691-3046) 1030 1040 1050 1060 1070 1080 KIAA05 TLDNIFLCVAPGAGPLPGEEPVAALFELYCVEICCGDLQLDNQLYNKSNFHFAVLVCQGE .:. :.:.:::: . .. : . : KIAA04 SLINKVPEELVFASLTGINVHYTQLATSHMLELSIQDVQVDNQLIGTTQ-PFMLYVT--- 2670 2680 2690 2700 2710 1090 1100 1110 1120 1130 1140 KIAA05 KAEPIQCSKMQSLLISNKELEEYKEKCFIKLCITLNEGKSILCDINEFSFELKPARLYVE :. :. . .. .. .. : : .: : : .. ..:. ... : KIAA04 ---PL--SNENEVIETGPAVQVNAVKFPSKSALT-NIYKHLMITAQRFTVQIEEKLLLKL 2720 2730 2740 2750 2760 2770 1150 1160 1170 1180 1190 1200 KIAA05 DTFVYYIKTLFDTYLPNSRLAGHSTHLSGGKQVLPMQVTQHARALVNPVKLRKLVIQPVN .: : .. .. . : ..: .:: . .. . . .:: .. . . KIAA04 LSFFGYDQAESEVEKYDENLH-EKTAEQGGTPI--RYYFENLKISIPQIKLSVFTSNKLP 2780 2790 2800 2810 2820 1210 1220 1230 1240 1250 1260 KIAA05 L-LVSIHASLKL-YIASDHTPLSFSVFERGPIFTTARQLVHALAMHYAAGALFRAGWVVG : : .....: . : . . .... : : . : . ... . :. : .:. ..: KIAA04 LDLKALKSTLGFPLIRFEDAVINLDPFTRVHPYETKEFIINDILKHFQEELLSQAARILG 2830 2840 2850 2860 2870 2880 1270 1280 1290 1300 1310 1320 KIAA05 SLDILGSPASLVRSIGNGVADFFRLPYEGLTRGPGAFVSGVSRGTTSFVKHISKGTLTSI :.:.::.: .:. ....::. :: . . :.:. ......:. .: KIAA04 SVDFLGNPMGLLNDVSEGVT--------GLIKYGN--VGGL-------IRNVTHGVSNSA 2890 2900 2910 2920 2930 1330 1340 1350 1360 1370 1380 KIAA05 TNLATSLARNMDRLSLDEEHYNRQEEWRRQLPESLGEGLRQGLSRLGISLLGAIAGIVDQ ...: .:. .. . ..:..: ...: : . : :: : :. :. ...:...... . KIAA04 AKFAGTLSDGLGK-TMDNRHQSEREYIRYHAATS-GEHLVAGIHGLAHGIIGGLTSVITS 2940 2950 2960 2970 2980 1390 1400 1410 1420 1430 1440 KIAA05 PMQNFQKTSEAQASAGHKAKGVISGVGKGIMGVFTKPIGGAAELVSQTGYGILHGAGLSQ ... . .:. .: : :::.:::..:. :::..:: ...:.:. .. : :: KIAA04 TVEGVK--TEGGVS------GFISGLGKGLVGTVTKPVAGALDFASETAQAVRDTATLSG 2990 3000 3010 3020 3030 3040 1450 1460 1470 1480 1490 1500 KIAA05 LPKQRHQPSDLHADQAPNSHVKYVWKMLQSLGRPEVHMALDVVLVRGSGQEHEGCLLLTS :. . : KIAA04 -PRTQAQRVRKPRCCTGPQGLLPRYSESQAEGQEQLFKLTDNIQDEFFIAVENIDSYCVL 3050 3060 3070 3080 3090 1637 residues in 1 query sequences 1985868 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:05:52 2008 done: Thu Dec 18 15:05:54 2008 Total Scan time: 0.870 Total Display time: 0.170 Function used was FASTA [version 34.26.5 April 26, 2007]