hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-05553978/chunk_1/iprscan-20080502-05553978.nocrc
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Query sequence: KIAA0540
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02138.8.ls Beige/BEACH domain                             627.8   8.6e-186   1
PF02138.8.fs Beige/BEACH domain                             625.9   3.2e-185   1
PF00400.22.ls WD domain, G-beta repeat                        65.4    1.7e-16   2
PF00400.22.fs WD domain, G-beta repeat                        61.6    2.2e-16   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02138.8.fs   1/1    1352  1632 ..     1   287 []   625.9 3.2e-185
PF02138.8.ls   1/1    1352  1632 ..     1   287 []   627.8 8.6e-186
PF00400.22.fs   2/3    1779  1817 ..     1    38 []    32.8  2.9e-08
PF00400.22.ls   1/2    1779  1817 ..     1    38 []    34.7  2.9e-07
PF00400.22.fs   3/3    1830  1868 ..     1    38 []    28.7  4.1e-07
PF00400.22.ls   2/2    1830  1868 ..     1    38 []    30.7  4.9e-06

Alignments of top-scoring domains:
PF02138.8.fs: domain 1 of 1, from 1352 to 1632: score 625.9, E = 3.2e-185
                   *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL
                      T++W+ +eISNFeYLm+LNt+AGR+yNDLsQYPVFPW+l DY+S++L
    KIAA0540  1352    TQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTL 1398 

                   DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY
                   DLsnP++FRdLSKPiG+ +p+ +   +e Yes+edp  + + +FHYGtHY
    KIAA0540  1399 DLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPA-GTIDKFHYGTHY 1447 

                   SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm
                   S+a+ V +YLiR+ePFt+   +LQ G+FD  DR FhS++ +W    le+ 
    KIAA0540  1448 SNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQA-RLESP 1496 

                   tDVKELIPEFFyLPEfLvNrngfDlGvrQn.GekVnDVdLPPWAkgDEKA
                   +DVKELIPEFFy P fL+N ngfDlG  Q + ekV+DV+LPPWA+     
    KIAA0540  1497 ADVKELIPEFFYFPDFLENQNGFDLGCLQLtNEKVGDVVLPPWAS----- 1541 

                   dPeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhlt
                   +Pe+Fiq hR+ALES+YVSahLHeWIDLIFGYKQrG++A+ A+NVF++ t
    KIAA0540  1542 SPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCT 1591 

                   YeGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-*
                   YeGaVDld ++D+ er A+e++I nFGQTP QL+++PHP R   
    KIAA0540  1592 YEGAVDLDHVTDERERKALEGIISNFGQTPCQLLKEPHPTR    1632 

PF02138.8.ls: domain 1 of 1, from 1352 to 1632: score 627.8, E = 8.6e-186
                   *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL
                      T++W+ +eISNFeYLm+LNt+AGR+yNDLsQYPVFPW+l DY+S++L
    KIAA0540  1352    TQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTL 1398 

                   DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY
                   DLsnP++FRdLSKPiG+ +p+ +   +e Yes+edp  + + +FHYGtHY
    KIAA0540  1399 DLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPA-GTIDKFHYGTHY 1447 

                   SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm
                   S+a+ V +YLiR+ePFt+   +LQ G+FD  DR FhS++ +W    le+ 
    KIAA0540  1448 SNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQA-RLESP 1496 

                   tDVKELIPEFFyLPEfLvNrngfDlGvrQn.GekVnDVdLPPWAkgDEKA
                   +DVKELIPEFFy P fL+N ngfDlG  Q + ekV+DV+LPPWA+     
    KIAA0540  1497 ADVKELIPEFFYFPDFLENQNGFDLGCLQLtNEKVGDVVLPPWAS----- 1541 

                   dPeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhlt
                   +Pe+Fiq hR+ALES+YVSahLHeWIDLIFGYKQrG++A+ A+NVF++ t
    KIAA0540  1542 SPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCT 1591 

                   YeGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-*
                   YeGaVDld ++D+ er A+e++I nFGQTP QL+++PHP R   
    KIAA0540  1592 YEGAVDLDHVTDERERKALEGIISNFGQTPCQLLKEPHPTR    1632 

PF00400.22.fs: domain 2 of 3, from 1779 to 1817: score 32.8, E = 2.9e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g++++ l+ H + Vtc+a +   g +l+sgSrD t+ +W    
    KIAA0540  1779    GKLLsQLsCHLDVVTCLALDTC-GIYLISGSRDTTCMVWR    1817 

PF00400.22.ls: domain 1 of 2, from 1779 to 1817: score 34.7, E = 2.9e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g++++ l+ H + Vtc+a +   g +l+sgSrD t+ +W    
    KIAA0540  1779    GKLLsQLsCHLDVVTCLALDTC-GIYLISGSRDTTCMVWR    1817 

PF00400.22.fs: domain 3 of 3, from 1830 to 1868: score 28.7, E = 4.1e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++vl+gH ++V+cva+s +   + +sgS+Dgt+ i     
    KIAA0540  1830    PKPVqVLyGHGAAVSCVAISTE-LDMAVSGSEDGTVIIHT    1868 

PF00400.22.ls: domain 2 of 2, from 1830 to 1868: score 30.7, E = 4.9e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++vl+gH ++V+cva+s +   + +sgS+Dgt+ i     
    KIAA0540  1830    PKPVqVLyGHGAAVSCVAISTE-LDMAVSGSEDGTVIIHT    1868 

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