hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06040842/chunk_1/iprscan-20080502-06040842.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0545 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00228 44.7 1.2e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00228 1/1 562 628 .. 1 80 [] 44.7 1.2e-08 Alignments of top-scoring domains: SM00228: domain 1 of 1, from 562 to 628: score 44.7, E = 1.2e-08 *->gglGfsivggifvssvvpGspAakaGrkslglLkvGDvIleVNGets g+lGf ++ v++v++ + A++aG L+ G +++e+ + KIAA0545 562 GQLGFHVKYDGTVAEVEDYGFAWQAG------LRQGSRLVEICK-VA 601 vegltheeavdllkkaggggvGekvtLtvlRgg<-* v +lth++ +dll+ + +v+++++++ KIAA0545 602 VVTLTHDQMIDLLRTSV------TVKVVIIPPF 628 //