hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06055003/chunk_1/iprscan-20080502-06055003.nocrc
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Query sequence: KIAA0546
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00386                                                  35.2      9e-06   4

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00386     1/4    1390  1422 ..     1    34 []    17.5      1.9
SM00386     2/4    1424  1455 ..     1    34 []     1.0  9.2e+02
SM00386     3/4    1659  1691 ..     1    34 []    10.1       53
SM00386     4/4    1768  1803 ..     1    34 []     6.6  1.6e+02

Alignments of top-scoring domains:
SM00386: domain 1 of 4, from 1390 to 1422: score 17.5, E = 1.9
                   *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-*
                      +  + a +++ rale++   ++++W  Y+++ ++   
    KIAA0546  1390    ESLDSALNVLARALENNK-DNPEIWCHYLRLFSK    1422 

SM00386: domain 2 of 4, from 1424 to 1455: score 1.0, E = 9.2e+02
                   *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-*
                      g  +++ +  e a+e  p  + ++W+ ++ +E+    
    KIAA0546  1424    GTKDEVQEMCETAVEYAP-DYQSFWT-FLHLEST    1455 

SM00386: domain 3 of 4, from 1659 to 1691: score 10.1, E = 53
                   *->gdieraRkiyeralekfpdksvdlWlkYaefEer<-*
                      + +++aR+++  a ek+p ++ ++++  ++f +    
    KIAA0546  1659    NQHDKARAVWLTAFEKNP-QNAEVFYHMCKFFIL    1691 

SM00386: domain 4 of 4, from 1768 to 1803: score 6.6, E = 1.6e+02
                   *->gdieraRkiyeralekfp..dksvdlWlkYaefEer<-*
                        i +  + ye al +  + d + ++W++Y+ f  +   
    KIAA0546  1768    SSIKETVEAYEAALGVAMrcDIVQKIWMDYLVFANN    1803 

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