# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh00779.fasta.huge -Q ../query/KIAA0549.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0549, 469 aa
 vs ./tmplib.23663 library

1987036 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 7.5771+/-0.00769; mu= 4.2823+/- 0.521
 mean_var=232.3437+/-56.393, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.084141

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1042  ( 1019 res)   fh02877                    (1019)  636 90.0 7.8e-19


>>KIAA1042  ( 1019 res)   fh02877                         (1019 aa)
 initn: 910 init1: 282 opt: 636  Z-score: 430.0  bits: 90.0 E(): 7.8e-19
Smith-Waterman score: 1119;  46.612% identity (66.119% similar) in 487 aa overlap (23-466:547-1007)

                       10        20        30        40        50  
KIAA05         LQQTEDKSLLNQGSSSEEVAGSSQKMGQPGPSGDSDLATALHRLSLRRQNYL
                                     :.: : ::  :. :: :::.::::::.:::
KIAA10 GSDIGNVVLDNKTNSIILETEAADLGNDERSKKPGTPGTPGSHDLETALRRLSLRRENYL
        520       530       540       550       560       570      

             60        70        80        90         100          
KIAA05 SEKQFFAEEWQRKIQVLADQKEGVSGCVTPTESLASLCTTQ--SEITDLSSAS-CLRGFM
       ::..:: :: .::.: ::.. :  :: .:::::. :: : .  ::.: .:. :   :...
KIAA10 SERRFFEEEQERKLQELAEKGELRSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYL
        580       590       600       610       620       630      

     110       120       130       140       150         160       
KIAA05 PEKLQIVKPLEGSQTLYHWQQLAQPNLGTILDPRPGVITKGFTQLPGD--AIYHISDLEE
       ::::::::::::: ::.::::::::.:: ::::::::.::::  :  :   .: ..:.::
KIAA10 PEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEE
        640       650       660       670       680       690      

       170       180       190       200       210       220       
KIAA05 DEEEGITFQVQQPLEVEEKLSTSKPVTGIFLPPITSAGGPVTVATANPGKCLSCTNSTFT
       :.      ... :     .:.:: ::      : :::         .::::.: ::::::
KIAA10 DDTGD---HISLP-----RLATSTPVQH----PETSAH--------HPGKCMSQTNSTFT
        700               710           720               730      

       230        240        250       260       270       280     
KIAA05 FTTCRILHPSD-ITQVTPS-SGFPSLSCGSSGSSSSNTAVNSPALSYRLSIGESITNRRD
       ::::::::::: .:.:::: .. :. .:::. :  ..: : .:    :::..::.:: :.
KIAA10 FTTCRILHPSDELTRVTPSLNSAPTPACGST-SHLKSTPVATPCTPRRLSLAESFTNTRE
        740       750       760        770       780       790     

         290       300       310             320        330        
KIAA05 STTTFSSTMSLAKLLQERGISAKVYHSPISENP------LQPL-PKSLAIPSTPPNSPSH
       ::::.:....:. ::.:::::: :: .: : .       :.   ::  .::::::::: .
KIAA10 STTTMSTSLGLVWLLKERGISAAVY-DPQSWDRAGRGSLLHSYTPKMAVIPSTPPNSPMQ
         800       810       820        830       840       850    

      340       350         360       370         380       390    
KIAA05 SPCPSPLPFEPRVHLS--ENFLASRPAETFLQEMY--GLRPSRNPPDVGQLKMNLVDRLK
       .:  ::  :: .      .:::::.:: ..:.:.   ..: :..  ::.  ..::::...
KIAA10 TPTSSPPSFEFKCTSPPYDNFLASKPASSILREVREKNVRSSESQTDVSVSNLNLVDKVR
          860       870       880       890       900       910    

          400       410           420           430                
KIAA05 RLGIARVVKNPGAQENGRCQEAE----IGPQKPDSAVY----LNSG--------SSLLGG
       :.:.:.:: : :  .     : .     ::  :  :.     .  :        .: .::
KIAA10 RFGVAKVV-NSGRAHVPTLTEEQGPLLCGPPGPAPALVPRGLVPEGLPLRCPTVTSAIGG
          920        930       940       950       960       970   

            440       450          460                  
KIAA05 L------RRNQSLPVIMGS---FAAPVCTSSPKMGVLKED         
       :      :::.:.:...::   . :::  .:   :.:            
KIAA10 LQLNSGIRRNRSFPTMVGSSMQMKAPVTLTS---GILMGAKLSKQTSLR
           980       990      1000         1010         




469 residues in 1 query   sequences
1987036 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:06:35 2008 done: Thu Dec 18 15:06:35 2008
 Total Scan time:  0.440 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]