hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06161022/chunk_1/iprscan-20080502-06161022.nocrc
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Query sequence: KIAA0552
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06818.5.fs Fez1                                           430.0   5.9e-135   1
PF06818.5.ls Fez1                                           432.0   7.6e-127   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06818.5.fs   1/1     474   675 ..     1   220 []   430.0 5.9e-135
PF06818.5.ls   1/1     474   675 ..     1   220 []   432.0 7.6e-127

Alignments of top-scoring domains:
PF06818.5.fs: domain 1 of 1, from 474 to 675: score 430.0, E = 5.9e-135
                   *->TkWEVCQKsGEISLLKQQLKESQAEVnQKaSEilaLraqLrdtRAqL
                      TkWEVCQK+GEISLLKQQLK+SQA+V+QK+SEi++Lr+qLr++RA+L
    KIAA0552   474    TKWEVCQKAGEISLLKQQLKDSQADVSQKLSEIVGLRSQLREGRASL 520  

                   rekEerllgLrdAlrtKeLELEvCEgELqRklqEaallPvDLvEPrEkvg
                   rekEe+ll+Lrd++++K+++LE+ EgEL+ +++++al+PvD  EP+ +++
    KIAA0552   521 REKEEQLLSLRDSFSSKQASLELGEGELPAACLKPALTPVDPAEPQDALA 570  

                   slEadeaklReqadaaaaadvRmRqDAqGrPelllesdeAkvdqeGeGgt
                    +E+deak+R+qa++aaaa+             l+ s++++ +++Ge gt
    KIAA0552   571 TCESDEAKMRRQAGVAAAAS-------------LV-SVDGEAEAGGESGT 606  

                   eAqlreLRrelERLRAELreERqrrerQalsFeqERlvWqeEKEkVirYQ
                   +A    LRre++RL+AEL++ER++rerQ++sF++ER+vW+eEKEkVi+YQ
    KIAA0552   607 RA----LRREVGRLQAELAAERRARERQGASFAEERRVWLEEKEKVIEYQ 652  

                   kQLQlSYveMYqRNQaLEkeLqq<-*
                   kQLQlSYveMYqRNQ+LE++L++   
    KIAA0552   653 KQLQLSYVEMYQRNQQLERRLRE    675  

PF06818.5.ls: domain 1 of 1, from 474 to 675: score 432.0, E = 7.6e-127
                   *->TkWEVCQKsGEISLLKQQLKESQAEVnQKaSEilaLraqLrdtRAqL
                      TkWEVCQK+GEISLLKQQLK+SQA+V+QK+SEi++Lr+qLr++RA+L
    KIAA0552   474    TKWEVCQKAGEISLLKQQLKDSQADVSQKLSEIVGLRSQLREGRASL 520  

                   rekEerllgLrdAlrtKeLELEvCEgELqRklqEaallPvDLvEPrEkvg
                   rekEe+ll+Lrd++++K+++LE+ EgEL+ +++++al+PvD  EP+ +++
    KIAA0552   521 REKEEQLLSLRDSFSSKQASLELGEGELPAACLKPALTPVDPAEPQDALA 570  

                   slEadeaklReqadaaaaadvRmRqDAqGrPelllesdeAkvdqeGeGgt
                    +E+deak+R+qa++aaaa+             l+ s++++ +++Ge gt
    KIAA0552   571 TCESDEAKMRRQAGVAAAAS-------------LV-SVDGEAEAGGESGT 606  

                   eAqlreLRrelERLRAELreERqrrerQalsFeqERlvWqeEKEkVirYQ
                   +A    LRre++RL+AEL++ER++rerQ++sF++ER+vW+eEKEkVi+YQ
    KIAA0552   607 RA----LRREVGRLQAELAAERRARERQGASFAEERRVWLEEKEKVIEYQ 652  

                   kQLQlSYveMYqRNQaLEkeLqq<-*
                   kQLQlSYveMYqRNQ+LE++L++   
    KIAA0552   653 KQLQLSYVEMYQRNQQLERRLRE    675  

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