hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06193139/chunk_1/iprscan-20080502-06193139.nocrc
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Query sequence: KIAA0554
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00611.13.fs Fes/CIP4 homology domain                       121.7    3.3e-35   1
PF00611.13.ls Fes/CIP4 homology domain                       123.6    5.3e-34   1
PF00018.18.fs SH3 domain                                      53.7    6.6e-14   1
PF00018.18.ls SH3 domain                                      55.7    1.5e-13   1
PF07653.7.fs Variant SH3 domain                              30.9    2.9e-08   1
PF07653.7.ls Variant SH3 domain                              32.7    1.2e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00611.13.fs   1/1      58   151 ..     1   107 []   121.7  3.3e-35
PF00611.13.ls   1/1      58   151 ..     1   107 []   123.6  5.3e-34
PF00018.18.fs   1/1     610   666 ..     1    59 []    53.7  6.6e-14
PF00018.18.ls   1/1     610   666 ..     1    59 []    55.7  1.5e-13
PF07653.7.fs   1/1     611   666 ..     1    69 []    30.9  2.9e-08
PF07653.7.ls   1/1     611   666 ..     1    69 []    32.7  1.2e-06

Alignments of top-scoring domains:
PF00611.13.fs: domain 1 of 1, from 58 to 151: score 121.7, E = 3.3e-35
                   *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk
                      +++++el  +d+++ L+k++++g+++le+++kF++eR++iE +YAk+
    KIAA0554    58    MSWGTEL--WDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQ 102  

                   LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls
                   L++lskky++kk          s+ e+++ ++s+  ka+ + l+e+++ +
    KIAA0554   103 LRNLSKKYQPKK---------NSKEEEEYKYTSC--KAFISNLNEMNDYA 141  

                   klHsqlseqL<-*
                    +H+ +se++   
    KIAA0554   142 GQHEVISENM    151  

PF00611.13.ls: domain 1 of 1, from 58 to 151: score 123.6, E = 5.3e-34
                   *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk
                      +++++el  +d+++ L+k++++g+++le+++kF++eR++iE +YAk+
    KIAA0554    58    MSWGTEL--WDQFDNLEKHTQWGIDILEKYIKFVKERTEIELSYAKQ 102  

                   LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls
                   L++lskky++kk          s+ e+++ ++s+  ka+ + l+e+++ +
    KIAA0554   103 LRNLSKKYQPKK---------NSKEEEEYKYTSC--KAFISNLNEMNDYA 141  

                   klHsqlseqL<-*
                    +H+ +se++   
    KIAA0554   142 GQHEVISENM    151  

PF00018.18.fs: domain 1 of 1, from 610 to 666: score 53.7, E = 6.6e-14
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                       +++ALY +e+++++ +s  +G++++v+e+++++gW + r++   ++
    KIAA0554   610    GTCKALYTFEGQNEGTISVVEGETLYVIEEDKGDGWTRIRRNE--DE 654  

                   eGliPsNYVepv<-*
                   eG++P++YVe     
    KIAA0554   655 EGYVPTSYVEVC    666  

PF00018.18.ls: domain 1 of 1, from 610 to 666: score 55.7, E = 1.5e-13
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                       +++ALY +e+++++ +s  +G++++v+e+++++gW + r++   ++
    KIAA0554   610    GTCKALYTFEGQNEGTISVVEGETLYVIEEDKGDGWTRIRRNE--DE 654  

                   eGliPsNYVepv<-*
                   eG++P++YVe     
    KIAA0554   655 EGYVPTSYVEVC    666  

PF07653.7.fs: domain 1 of 1, from 611 to 666: score 30.9, E = 2.9e-08
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww
                       ++a+  +++ ++++       +s+ +G++++Vi    ++d ++gw 
    KIAA0554   611    TCKALYTFEG-QNEGT------ISVVEGETLYVI----EEDKGdGWT 646  

                   egeslggGrrrRGlvPssaveel<-*
                   + ++ ++ ++  G+vP+s+ve++   
    KIAA0554   647 RIRR-NEDEE--GYVPTSYVEVC    666  

PF07653.7.ls: domain 1 of 1, from 611 to 666: score 32.7, E = 1.2e-06
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww
                       ++a+  +++ ++++       +s+ +G++++Vi    ++d ++gw 
    KIAA0554   611    TCKALYTFEG-QNEGT------ISVVEGETLYVI----EEDKGdGWT 646  

                   egeslggGrrrRGlvPssaveel<-*
                   + ++ ++ ++  G+vP+s+ve++   
    KIAA0554   647 RIRR-NEDEE--GYVPTSYVEVC    666  

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