hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06261857/chunk_1/iprscan-20080502-06261857.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0558 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08473.1.fs Neuronal voltage-dependent calcium channe 236.8 3.1e-75 1 PF08399.1.fs VWA N-terminal 240.4 1.9e-74 1 PF08399.1.ls VWA N-terminal 242.4 9.1e-70 1 PF08473.1.ls Neuronal voltage-dependent calcium channe 238.7 1.1e-68 1 PF02743.8.fs Cache domain 131.4 3e-37 1 PF02743.8.ls Cache domain 133.4 5.8e-37 1 PF00092.18.fs von Willebrand factor type A domain 72.1 1.5e-22 1 PF00092.18.ls von Willebrand factor type A domain 74.0 4.4e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08399.1.ls 1/1 141 265 .. 1 137 [] 242.4 9.1e-70 PF08399.1.fs 1/1 141 265 .. 1 137 [] 240.4 1.9e-74 PF00092.18.ls 1/1 291 469 .. 1 195 [] 74.0 4.4e-19 PF00092.18.fs 1/1 291 469 .. 1 195 [] 72.1 1.5e-22 PF02743.8.fs 1/1 485 574 .. 1 92 [] 131.4 3e-37 PF02743.8.ls 1/1 485 574 .. 1 92 [] 133.4 5.8e-37 PF08473.1.ls 1/1 580 666 .. 1 94 [] 238.7 1.1e-68 PF08473.1.fs 1/1 580 666 .. 1 94 [] 236.8 3.1e-75 Alignments of top-scoring domains: PF08399.1.ls: domain 1 of 1, from 141 to 265: score 242.4, E = 9.1e-70 *->AEnaALqeahefnedlaannfqYYdAkainepgeiITPapeidgnla AEn+ q+ah++++++++++++YYdAka++e+++ ++ +++ KIAA0558 141 AENF--QKAHRWQDNIKEEDIVYYDAKADAELDD-------PESEDV 178 elgtkyntkemvLepdanFknlpVNtsvSsVhvPtnvYdrdPevlnalnW e g+k++t ++++++d+nFkn +VN+s+++V++Pt++Y++++ +ln+lnW KIAA0558 179 ERGSKASTLRLDFIEDPNFKN-KVNYSYAAVQIPTDIYKGSTVILNELNW 227 SeaKFLDkVFreNyeeDPtLsWQYFGSstGflRyYPAtkW<-* +ea L++VF+eN+++DPtL WQ+FGS+tG++RyYPAt+W KIAA0558 228 TEA--LENVFMENRRQDPTLLWQVFGSATGVTRYYPATPW 265 PF08399.1.fs: domain 1 of 1, from 141 to 265: score 240.4, E = 1.9e-74 *->AEnaALqeahefnedlaannfqYYdAkainepgeiITPapeidgnla AEn+ q+ah++++++++++++YYdAka++e+++ ++ +++ KIAA0558 141 AENF--QKAHRWQDNIKEEDIVYYDAKADAELDD-------PESEDV 178 elgtkyntkemvLepdanFknlpVNtsvSsVhvPtnvYdrdPevlnalnW e g+k++t ++++++d+nFkn +VN+s+++V++Pt++Y++++ +ln+lnW KIAA0558 179 ERGSKASTLRLDFIEDPNFKN-KVNYSYAAVQIPTDIYKGSTVILNELNW 227 SeaKFLDkVFreNyeeDPtLsWQYFGSstGflRyYPAtkW<-* +ea L++VF+eN+++DPtL WQ+FGS+tG++RyYPAt+W KIAA0558 228 TEA--LENVFMENRRQDPTLLWQVFGSATGVTRYYPATPW 265 PF00092.18.ls: domain 1 of 1, from 291 to 469: score 74.0, E = 4.4e-19 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY D+v+++D+SgS+++ ++++k+ v ++++ + d++ V + ++ KIAA0558 291 DMVIIVDVSGSVSGLT-LKLMKTSVCEMLD----TLSDDDYVNVASF 332 ssdvrtefsLndysskddllaav...lknlrylgGgTnNtgkALkyalen + ++++ ++ + ++++v +++ + +G+T ++++ya ++ KIAA0558 333 NEKAQPVSCFTHLVQANVRNKKVfkeAVQGMVAKGTTG-YKAGFEYAFDQ 381 lfsstMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkk l+ s + R n +k+++++TDG + ++v ++ + KIAA0558 382 LQNS--------NITRA-NCNKMIMMFTDGGEDRVQDVFeKYNWPNRT-- 420 gvgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiq v++ +f+vG+ +++d L+ +a + g++f +++ a+ ++ q++ KIAA0558 421 -VRVFTFSVGQ-HNYDVTPLQwMA--CANKGYYFEIPSIGAIRINTQEYL 466 eql<-* + l KIAA0558 467 DVL 469 PF00092.18.fs: domain 1 of 1, from 291 to 469: score 72.1, E = 1.5e-22 *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY D+v+++D+SgS+++ ++++k+ v ++++ + d++ V + ++ KIAA0558 291 DMVIIVDVSGSVSGLT-LKLMKTSVCEMLD----TLSDDDYVNVASF 332 ssdvrtefsLndysskddllaav...lknlrylgGgTnNtgkALkyalen + ++++ ++ + ++++v +++ + +G+T ++++ya ++ KIAA0558 333 NEKAQPVSCFTHLVQANVRNKKVfkeAVQGMVAKGTTG-YKAGFEYAFDQ 381 lfsstMikrnrsagsRpenapkvlillTDGksndggsve.aaaalrdkkk l+ s + R n +k+++++TDG + ++v ++ + KIAA0558 382 LQNS--------NITRA-NCNKMIMMFTDGGEDRVQDVFeKYNWPNRT-- 420 gvgitvfavGvGgdvdeaeLr.iasepcseghvfyvedfdalwlqlqdiq v++ +f+vG+ +++d L+ +a + g++f +++ a+ ++ q++ KIAA0558 421 -VRVFTFSVGQ-HNYDVTPLQwMA--CANKGYYFEIPSIGAIRINTQEYL 466 eql<-* + l KIAA0558 467 DVL 469 PF02743.8.fs: domain 1 of 1, from 485 to 574: score 131.4, E = 3e-37 *->wTePYvdaastgdmViTvsvPvydrtneqrnktn.dngdllGVvgiD wT++Y+da ++++V+T ++Pv+++t+ +++++++n+ +lGV+giD KIAA0558 485 WTNVYEDAL-GLGLVVTGTLPVFNLTQ--DGPGEkKNQLILGVMGID 528 vpledLlkltksiklGktGYaFivdnnGkvlaHPnlrpvtkllkdw<-* v l d+++lt++++lG +GY+F++d nG+vl+HPnl+p t++ ++ KIAA0558 529 VALNDIKRLTPNYTLGANGYVFAIDLNGYVLLHPNLKPQTTNFREP 574 PF02743.8.ls: domain 1 of 1, from 485 to 574: score 133.4, E = 5.8e-37 *->wTePYvdaastgdmViTvsvPvydrtneqrnktn.dngdllGVvgiD wT++Y+da ++++V+T ++Pv+++t+ +++++++n+ +lGV+giD KIAA0558 485 WTNVYEDAL-GLGLVVTGTLPVFNLTQ--DGPGEkKNQLILGVMGID 528 vpledLlkltksiklGktGYaFivdnnGkvlaHPnlrpvtkllkdw<-* v l d+++lt++++lG +GY+F++d nG+vl+HPnl+p t++ ++ KIAA0558 529 VALNDIKRLTPNYTLGANGYVFAIDLNGYVLLHPNLKPQTTNFREP 574 PF08473.1.ls: domain 1 of 1, from 580 to 666: score 238.7, E = 1.1e-68 *->LDAELEdevKveIRrsMIDGekgekrfrTLvKSqDERYIDkgtRtYT LDAELEde+K+eIRrsMIDG+kg+k++rTLvKS+DERYID++tR+YT KIAA0558 580 LDAELEDENKEEIRRSMIDGNKGHKQIRTLVKSLDERYIDEVTRNYT 626 WvPvrstdYSLaLVLPdYStfYikAkledtItQakykkGkmkdsEsL<-* WvP+rst+YSL+LVLP+YStfY++A+l+d+I+Q+ky +E+L KIAA0558 627 WVPIRSTNYSLGLVLPPYSTFYLQANLSDQILQVKY-------FEFL 666 PF08473.1.fs: domain 1 of 1, from 580 to 666: score 236.8, E = 3.1e-75 *->LDAELEdevKveIRrsMIDGekgekrfrTLvKSqDERYIDkgtRtYT LDAELEde+K+eIRrsMIDG+kg+k++rTLvKS+DERYID++tR+YT KIAA0558 580 LDAELEDENKEEIRRSMIDGNKGHKQIRTLVKSLDERYIDEVTRNYT 626 WvPvrstdYSLaLVLPdYStfYikAkledtItQakykkGkmkdsEsL<-* WvP+rst+YSL+LVLP+YStfY++A+l+d+I+Q+ky +E+L KIAA0558 627 WVPIRSTNYSLGLVLPPYSTFYLQANLSDQILQVKY-------FEFL 666 //