hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06363018/chunk_1/iprscan-20080502-06363018.nocrc
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Query sequence: KIAA0564
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07728.4.fs ATPase family associated with various cellul   267.6    5.3e-78   2
PF07728.4.ls ATPase family associated with various cellul   241.5    1.7e-69   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07728.4.fs   1/2       1   147 [.    28   184 .]   100.7  3.6e-29
PF07728.4.ls   1/2       1   147 [.     1   184 []    72.7  1.1e-18
PF07728.4.fs   2/2     312   467 ..     1   184 []   166.9  1.5e-48
PF07728.4.ls   2/2     312   467 ..     1   184 []   168.8  1.3e-47

Alignments of top-scoring domains:
PF07728.4.fs: domain 1 of 2, from 1 to 147: score 100.7, E = 3.6e-29
                   *->grplfyvqltrdtteedLlgrrdiapllhGngttswvdgpLvrAary
                      g++ + ++l++d+t++dLl++r + p    ng+t+w+ +pLv Aa  
    KIAA0564     1    GYNIEPIMLYQDMTARDLLQQRYTLP----NGDTAWRSSPLVNAAL- 42   

                   aretegslpeghivvlDEinraspevlnaLlslLderrlllpdggelvkv
                            eg+ v+lD+i+r +  +l +L +l+++r+l+l+dg +l+++
    KIAA0564    43 ---------EGKLVLLDGIHRVNAGTLAVLQRLIHDRELSLYDGSRLLRE 83   

                   apydklaerg.reeldlwklgrl.ihd.frliataNpld.gprglnelsa
                   ++y +l+e  +     l k+  ++ih++fr+ia+a+p+  g+  +++l++
    KIAA0564    84 DRYMRLKEELqLSDEQLQKRSIFpIHPsFRIIALAEPPViGSTAHQWLGP 133  

                   ALrrRFlfvtvdpp<-*
                   +++  F f+++ p+   
    KIAA0564   134 EFLTMFFFHYMKPL    147  

PF07728.4.ls: domain 1 of 2, from 1 to 147: score 72.7, E = 1.1e-18
                   *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg
                                                 g++ + ++l++d+t++dLl+
    KIAA0564     1    ---------------------------GYNIEPIMLYQDMTARDLLQ 20   

                   rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras
                   +r + p    ng+t+w+ +pLv Aa           eg+ v+lD+i+r +
    KIAA0564    21 QRYTLP----NGDTAWRSSPLVNAAL----------EGKLVLLDGIHRVN 56   

                   pevlnaLlslLderrlllpdggelvkvapydklaerg.reeldlwklgrl
                     +l +L +l+++r+l+l+dg +l+++++y +l+e  +     l k+  +
    KIAA0564    57 AGTLAVLQRLIHDRELSLYDGSRLLREDRYMRLKEELqLSDEQLQKRSIF 106  

                   .ihd.frliataNpld.gprglnelsaALrrRFlfvtvdpp<-*
                   +ih++fr+ia+a+p+  g+  +++l+++++  F f+++ p+   
    KIAA0564   107 pIHPsFRIIALAEPPViGSTAHQWLGPEFLTMFFFHYMKPL    147  

PF07728.4.fs: domain 2 of 2, from 312 to 467: score 166.9, E = 1.5e-48
                   *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg
                      ++lLvG++G+GK+++++r++++l    +rp++y+ql+rdtt + L+ 
    KIAA0564   312    HLLLVGNQGVGKNKIVDRFLHLL----NRPREYIQLHRDTTVQTLTL 354  

                   rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras
                   + +++     +g ++++d+pLv+A++           ghi+v+DE ++a+
    KIAA0564   355 QPSVK-----DGLIVYEDSPLVKAVK----------LGHILVVDEADKAP 389  

                   pevlnaLlslLderrlllpdggelvkvapydklaerg.reeldlwklgrl
                   ++v+++L +l++++++ l dg+++v  +++     +++re+       ++
    KIAA0564   390 TNVTCILKTLVENGEMILADGRRIVANSAN-----VNgREN-------VV 427  

                   .ihd.frliataNpldgprglnelsaALrrRFlfvtvdpp<-*
                    ih++fr+i +aN++++p+ +n+ +  L++ F ++ vd+p   
    KIAA0564   428 vIHPdFRMIVLANRPGFPFLGNDFFGTLGDIFSCHAVDNP    467  

PF07728.4.ls: domain 2 of 2, from 312 to 467: score 168.8, E = 1.3e-47
                   *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg
                      ++lLvG++G+GK+++++r++++l    +rp++y+ql+rdtt + L+ 
    KIAA0564   312    HLLLVGNQGVGKNKIVDRFLHLL----NRPREYIQLHRDTTVQTLTL 354  

                   rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras
                   + +++     +g ++++d+pLv+A++           ghi+v+DE ++a+
    KIAA0564   355 QPSVK-----DGLIVYEDSPLVKAVK----------LGHILVVDEADKAP 389  

                   pevlnaLlslLderrlllpdggelvkvapydklaerg.reeldlwklgrl
                   ++v+++L +l++++++ l dg+++v  +++     +++re+       ++
    KIAA0564   390 TNVTCILKTLVENGEMILADGRRIVANSAN-----VNgREN-------VV 427  

                   .ihd.frliataNpldgprglnelsaALrrRFlfvtvdpp<-*
                    ih++fr+i +aN++++p+ +n+ +  L++ F ++ vd+p   
    KIAA0564   428 vIHPdFRMIVLANRPGFPFLGNDFFGTLGDIFSCHAVDNP    467  

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