hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06431055/chunk_1/iprscan-20080502-06431055.nocrc
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Query sequence: KIAA0568
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00681.10.fs  Plectin repeat                            25.0    1.5e-06   2
PF04508.3.ls   Viral A-type inclusion protein repeat     31.7    2.4e-06   7
PF02370.7.ls   M protein repeat                          23.4    0.00076   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00681.10.fs   1/2    1330  1362 ..    13    45 .]    24.3  2.4e-06

Alignments of top-scoring domains:
PF00681.10.fs: domain 1 of 2, from 1330 to 1362: score 24.3, E = 2.4e-06
                   *->liDPvtgerLsveeAvrrGLvdpetaqkLleae<-*
                      +i+P tg  Ls eeA r GL+d  ++ kL+++e   
    KIAA0568  1330    VIHPDTGRELSPEEAHRAGLIDWNMFVKLRSQE    1362 

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