hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06505935/chunk_1/iprscan-20080502-06505935.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0571 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00169.19.fs PH domain 77.0 5.7e-23 1 PF00169.19.ls PH domain 78.0 2.7e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00169.19.ls 1/1 20 124 .. 1 92 [] 78.0 2.7e-20 PF00169.19.fs 1/1 32 124 .. 14 92 .] 77.0 5.7e-23 Alignments of top-scoring domains: PF00169.19.ls: domain 1 of 1, from 20 to 124: score 78.0, E = 2.7e-20 *->vikeGwLlkkggkkswkkRyfvLfd.......dvLlyykdkk.kkpk ++e L+ + k wkkR+f+L++++ ++++dvL+yyk++++kkp KIAA0571 20 QVRELDLWYHH-EKAWKKRWFILRSgrmsgdpDVLEYYKNDHsKKPL 65 gsipLsgi.qvtkvpdn.....krkncFeirt.dretlllqaeseeerke ++i+L+ ++qv+ ++++ + ++F i+t++r t++l ae+ee++++ KIAA0571 66 RIINLNFCeQVDAGLTFnkkelQDSFVFDIKTsER-TFYLVAETEEDMNK 114 Wvkaiqsair<-* Wv++i++ + KIAA0571 115 WVQSICQICG 124 PF00169.19.fs: domain 1 of 1, from 32 to 124: score 77.0, E = 5.7e-23 *->kswkkRyfvLfd.......dvLlyykdkk.kkpkgsipLsgi.qvtk k wkkR+f+L++++ ++++dvL+yyk++++kkp ++i+L+ ++qv+ KIAA0571 32 KAWKKRWFILRSgrmsgdpDVLEYYKNDHsKKPLRIINLNFCeQVDA 78 vpdn.....krkncFeirt.dretlllqaeseeerkeWvkaiqsair<-* ++++ + ++F i+t++r t++l ae+ee++++Wv++i++ + KIAA0571 79 GLTFnkkelQDSFVFDIKTsER-TFYLVAETEEDMNKWVQSICQICG 124 //