hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06523579/chunk_1/iprscan-20080502-06523579.nocrc
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Query sequence: KIAA0572
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF03399.6.ls SAC3/GANP/Nin1/mts3/eIF-3 p25 family          341.8      1e-99   1
PF03399.6.fs SAC3/GANP/Nin1/mts3/eIF-3 p25 family          339.9      4e-99   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF03399.6.fs   1/1     576   802 ..     1   249 []   339.9    4e-99
PF03399.6.ls   1/1     576   802 ..     1   249 []   341.8    1e-99

Alignments of top-scoring domains:
PF03399.6.fs: domain 1 of 1, from 576 to 802: score 339.9, E = 4e-99
                   *->erpnPeeLrplkvLlktldyLvdkildqaeyeaeraWYsfvddrlrs
                      e+p+P+eLrpl+vL +t+dyLv++i+dq+e+++++ WY+fv++r+r 
    KIAA0572   576    EEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRD-WYDFVWNRTRG 621  

                   irqDltvqgvedsitvkdyEsferyHilslarlalEegdeqFDlqqelee
                   ir+D+t+q+++d++tv ++E+++r+Hi++ a++++Ee++++FD+++++e+
    KIAA0572   622 IRKDITQQHLCDPLTVSLIEKCTRFHIHC-AHFMCEEPMSSFDAKINNEN 670  

                   lnkClgllqLkelYqdlkkkleecpneaefrigynlLyklLaslndpdfh
                   ++kC  l++Lke+Yqdl++k+++c++eaef+ gyn+L+    sln +d++
    KIAA0572   671 MTKC--LQSLKEMYQDLRNKGVFCASEAEFQ-GYNVLL----SLNKGDIL 713  

                   telellDdppkevredpyvktalqLeaalmegnnTEacNLYnkffrllqk
                   +e++++   +++vr++++vk+a+q  aal+++n       +++ff+l+q+
    KIAA0572   714 REVQQF---HPAVRNSSEVKFAVQAFAALNSNN-------FVRFFKLVQS 753  

                   nnqppylcdysclmddifldtiRkealrvisksYnsr...hqkiplkyla
                      ++yl  ++cl++ +++++iRk alr+++ +Y+++++++  +pl+ ++
    KIAA0572   754 ---ASYL--NACLLH-CYFSQIRKDALRALNFAYTVStqrSTIFPLDGVV 797  

                   elLgf<-*
                   ++L+f   
    KIAA0572   798 RMLLF    802  

PF03399.6.ls: domain 1 of 1, from 576 to 802: score 341.8, E = 1e-99
                   *->erpnPeeLrplkvLlktldyLvdkildqaeyeaeraWYsfvddrlrs
                      e+p+P+eLrpl+vL +t+dyLv++i+dq+e+++++ WY+fv++r+r 
    KIAA0572   576    EEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRD-WYDFVWNRTRG 621  

                   irqDltvqgvedsitvkdyEsferyHilslarlalEegdeqFDlqqelee
                   ir+D+t+q+++d++tv ++E+++r+Hi++ a++++Ee++++FD+++++e+
    KIAA0572   622 IRKDITQQHLCDPLTVSLIEKCTRFHIHC-AHFMCEEPMSSFDAKINNEN 670  

                   lnkClgllqLkelYqdlkkkleecpneaefrigynlLyklLaslndpdfh
                   ++kC  l++Lke+Yqdl++k+++c++eaef+ gyn+L+    sln +d++
    KIAA0572   671 MTKC--LQSLKEMYQDLRNKGVFCASEAEFQ-GYNVLL----SLNKGDIL 713  

                   telellDdppkevredpyvktalqLeaalmegnnTEacNLYnkffrllqk
                   +e++++   +++vr++++vk+a+q  aal+++n       +++ff+l+q+
    KIAA0572   714 REVQQF---HPAVRNSSEVKFAVQAFAALNSNN-------FVRFFKLVQS 753  

                   nnqppylcdysclmddifldtiRkealrvisksYnsr...hqkiplkyla
                      ++yl  ++cl++ +++++iRk alr+++ +Y+++++++  +pl+ ++
    KIAA0572   754 ---ASYL--NACLLH-CYFSQIRKDALRALNFAYTVStqrSTIFPLDGVV 797  

                   elLgf<-*
                   ++L+f   
    KIAA0572   798 RMLLF    802  

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