hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06523579/chunk_1/iprscan-20080502-06523579.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0572 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03399.6.ls SAC3/GANP/Nin1/mts3/eIF-3 p25 family 341.8 1e-99 1 PF03399.6.fs SAC3/GANP/Nin1/mts3/eIF-3 p25 family 339.9 4e-99 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03399.6.fs 1/1 576 802 .. 1 249 [] 339.9 4e-99 PF03399.6.ls 1/1 576 802 .. 1 249 [] 341.8 1e-99 Alignments of top-scoring domains: PF03399.6.fs: domain 1 of 1, from 576 to 802: score 339.9, E = 4e-99 *->erpnPeeLrplkvLlktldyLvdkildqaeyeaeraWYsfvddrlrs e+p+P+eLrpl+vL +t+dyLv++i+dq+e+++++ WY+fv++r+r KIAA0572 576 EEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRD-WYDFVWNRTRG 621 irqDltvqgvedsitvkdyEsferyHilslarlalEegdeqFDlqqelee ir+D+t+q+++d++tv ++E+++r+Hi++ a++++Ee++++FD+++++e+ KIAA0572 622 IRKDITQQHLCDPLTVSLIEKCTRFHIHC-AHFMCEEPMSSFDAKINNEN 670 lnkClgllqLkelYqdlkkkleecpneaefrigynlLyklLaslndpdfh ++kC l++Lke+Yqdl++k+++c++eaef+ gyn+L+ sln +d++ KIAA0572 671 MTKC--LQSLKEMYQDLRNKGVFCASEAEFQ-GYNVLL----SLNKGDIL 713 telellDdppkevredpyvktalqLeaalmegnnTEacNLYnkffrllqk +e++++ +++vr++++vk+a+q aal+++n +++ff+l+q+ KIAA0572 714 REVQQF---HPAVRNSSEVKFAVQAFAALNSNN-------FVRFFKLVQS 753 nnqppylcdysclmddifldtiRkealrvisksYnsr...hqkiplkyla ++yl ++cl++ +++++iRk alr+++ +Y+++++++ +pl+ ++ KIAA0572 754 ---ASYL--NACLLH-CYFSQIRKDALRALNFAYTVStqrSTIFPLDGVV 797 elLgf<-* ++L+f KIAA0572 798 RMLLF 802 PF03399.6.ls: domain 1 of 1, from 576 to 802: score 341.8, E = 1e-99 *->erpnPeeLrplkvLlktldyLvdkildqaeyeaeraWYsfvddrlrs e+p+P+eLrpl+vL +t+dyLv++i+dq+e+++++ WY+fv++r+r KIAA0572 576 EEPLPHELRPLPVLSRTMDYLVTQIMDQKEGSLRD-WYDFVWNRTRG 621 irqDltvqgvedsitvkdyEsferyHilslarlalEegdeqFDlqqelee ir+D+t+q+++d++tv ++E+++r+Hi++ a++++Ee++++FD+++++e+ KIAA0572 622 IRKDITQQHLCDPLTVSLIEKCTRFHIHC-AHFMCEEPMSSFDAKINNEN 670 lnkClgllqLkelYqdlkkkleecpneaefrigynlLyklLaslndpdfh ++kC l++Lke+Yqdl++k+++c++eaef+ gyn+L+ sln +d++ KIAA0572 671 MTKC--LQSLKEMYQDLRNKGVFCASEAEFQ-GYNVLL----SLNKGDIL 713 telellDdppkevredpyvktalqLeaalmegnnTEacNLYnkffrllqk +e++++ +++vr++++vk+a+q aal+++n +++ff+l+q+ KIAA0572 714 REVQQF---HPAVRNSSEVKFAVQAFAALNSNN-------FVRFFKLVQS 753 nnqppylcdysclmddifldtiRkealrvisksYnsr...hqkiplkyla ++yl ++cl++ +++++iRk alr+++ +Y+++++++ +pl+ ++ KIAA0572 754 ---ASYL--NACLLH-CYFSQIRKDALRALNFAYTVStqrSTIFPLDGVV 797 elLgf<-* ++L+f KIAA0572 798 RMLLF 802 //