hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-06541288/chunk_1/iprscan-20080502-06541288.nocrc
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Query sequence: KIAA0573
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00085.10.fs Thioredoxin                                  71.3    2.1e-19   1
PF00085.10.ls Thioredoxin                                  73.3      7e-19   1
PF07449.2.ls Hydrogenase-1 expression protein HyaE       -24.3      0.003   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF07449.2.ls   1/1      68   168 ..     1   114 []   -24.3    0.003
PF00085.10.fs   1/1      75   184 ..     1   111 []    71.3  2.1e-19
PF00085.10.ls   1/1      75   184 ..     1   111 []    73.3    7e-19

Alignments of top-scoring domains:
PF07449.2.ls: domain 1 of 1, from 68 to 168: score -24.3, E = 0.003
                   *->LiqRLltrfGwpvVDNaatlDdflaaAdeepgdgVLLlaGDPaRfP.
                      +    +t+ + + +D   ++D+ l+     ++ +++ +  D  Rf +
    KIAA0573    68    VFTP-VTT-EITSLD-TENIDEILNN----ADVALVNFYADWCRFSq 107  

                   .......EalDvAVVLPELlraFpqrfrgavvarDreqEeaLaaRFgvlr
                     ++  +Ea+Dv      +  +Fp+    + ++ D  q + +a+R+++++
    KIAA0573   108 mlhpifeEASDV------IKEEFPNENQVVFARVDCDQHSDIAQRYRISK 151  

                   rPsLvffrdGrylGvLagirDWdEY<-*
                   +P+L  fr G             EY   
    KIAA0573   152 YPTLKLFRNGMMMK--------REY    168  

PF00085.10.fs: domain 1 of 1, from 75 to 184: score 71.3, E = 2.1e-19
                   *->vvlvltdenFdeevaksdekkpVLVdFYApWCGpCKmlAPeyeklAq
                      ++  l  en de++++    +  LV FYA+WC   +ml P++e++++
    KIAA0573    75    EITSLDTENIDEILNN-A--DVALVNFYADWCRFSQMLHPIFEEASD 118  

                   eykdets...dvkfaKVDaDenpdlaskygVrgfPTlkffknGkkvepid
                     k+e +++++v+fa VD+D ++d+a++y ++ +PTlk+f+nG   +  +
    KIAA0573   119 VIKEEFPnenQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKR-E 167  

                   yvGaRtkddLvafikkh<-*
                   y G R+  +L+++i+++   
    KIAA0573   168 YRGQRSVKALADYIRQQ    184  

PF00085.10.ls: domain 1 of 1, from 75 to 184: score 73.3, E = 7e-19
                   *->vvlvltdenFdeevaksdekkpVLVdFYApWCGpCKmlAPeyeklAq
                      ++  l  en de++++    +  LV FYA+WC   +ml P++e++++
    KIAA0573    75    EITSLDTENIDEILNN-A--DVALVNFYADWCRFSQMLHPIFEEASD 118  

                   eykdets...dvkfaKVDaDenpdlaskygVrgfPTlkffknGkkvepid
                     k+e +++++v+fa VD+D ++d+a++y ++ +PTlk+f+nG   +  +
    KIAA0573   119 VIKEEFPnenQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKR-E 167  

                   yvGaRtkddLvafikkh<-*
                   y G R+  +L+++i+++   
    KIAA0573   168 YRGQRSVKALADYIRQQ    184  

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