HUGE

Gene/Protein Characteristic Table for KIAA0575

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK01094
Accession No. :	AB011147
Description :	GREB1 protein isoform a.
HUGO Gene Name :
Clone Name :	hj00216 [Vector Info]
Flexi ORF Clone :	pF1KA0575
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5285 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2332 bp

Genome contig ID gi89161199f_11569845
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
TGTTCCAGTCTTATAAATAAAACTTATAATGCATG
Flanking genome sequence
(130520 - 130569)
----+----*----+----*----+----*----+----*----+----*
TATTGTTTTGTTGGTGAGTATTCATAGCACTGTTTCGAGATAAGGTAGTG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 2 f 11669845 11700363 16 99.5 Perfect prediction

Features of the protein sequence	Description

Length: 952 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAG11207	100.0	GREB1 protein [...	synthetic construct
Q4ZG55	99.9	Protein GREB1; ...	Homo sapiens
AAH54502	99.9	GREB1 protein [...	Homo sapiens
EAX00925	99.8	GREB1 protein, ...	Homo sapiens
XP_001159582	99.3	GREB1 protein i...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: TCCTGGGTTCAAGTGATTCTC

Primer_r
: TTTGGAGGATGAGGTGGGCAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 2

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TACTTCCTGTCCTGCCATTCG
Primer_r	: GAACCTACTTGGCTGAAATCC
PCR product length	: 130 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2332 bp
Genome contig ID	gi89161199f_11569845
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- TGTTCCAGTCTTATAAATAAAACTTATAATGCATG
Flanking genome sequence (130520 - 130569)	----+--------+--------+--------+--------+----* TATTGTTTTGTTGGTGAGTATTCATAGCACTGTTTCGAGATAAGGTAGTG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	2	f	11669845	11700363	16	99.5	Perfect prediction

Primer_f	: TCCTGGGTTCAAGTGATTCTC
Primer_r	: TTTGGAGGATGAGGTGGGCAG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA0575

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information