hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-06590283/chunk_1/iprscan-20080502-06590283.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0576 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 141.3 2.4e-39 12 PF00096.16.fs Zinc finger, C2H2 type 126.1 8.9e-35 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 6/12 512 535 .. 1 24 [] 19.4 0.012 Alignments of top-scoring domains: PF00096.16.ls: domain 6 of 12, from 512 to 535: score 19.4, E = 0.012 *->ykCpfdCgksFsrksnLkrHlrt.H<-* ykC +Cgk++ +++ + H+ + H KIAA0576 512 YKCV-VCGKVCDDSGVIRLHMSRiH 535 //