hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07022155/chunk_1/iprscan-20080502-07022155.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0578 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00282 720.4 4.9e-212 6 SM00181 54.6 1.3e-11 3 SM00294 37.3 2e-06 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00282 1/6 96 238 .. 1 137 [] 118.7 6.6e-31 SM00181 1/3 262 302 .. 1 32 [] 15.9 5.7 SM00282 2/6 350 484 .. 1 137 [] 136.0 4e-36 SM00282 3/6 538 690 .. 1 137 [] 156.1 3.7e-42 SM00181 2/3 717 751 .. 1 32 [] 27.3 0.0021 SM00282 4/6 776 915 .. 1 137 [] 97.8 1.3e-24 SM00282 5/6 963 1099 .. 1 137 [] 130.8 1.5e-34 SM00181 3/3 1124 1158 .. 1 32 [] 11.4 25 SM00282 6/6 1186 1343 .. 1 137 [] 81.1 1.4e-19 SM00294 1/1 1487 1505 .. 1 19 [] 37.3 2e-06 Alignments of top-scoring domains: SM00282: domain 1 of 6, from 96 to 238: score 118.7, E = 6.6e-31 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl +++ sf+++T+s++Gl ly ++++ +dfl+l L ++Grl+l KIAA0578 96 CeSEMSFQLKTRSARGLVLYFDdegFCDFLELILT-----RGGRLQL 137 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.. +++ + ++pa+l +d tp+nDG WH+V+++r+ r+ tL++D + KIAA0578 138 SFSIFC---AEPATLLAD----TPVNDGAWHSVRIRRQFRNTTLFIDQve 180 gnpvsges..t.LdldkeesgplylGGlPe.............lpvspgF +v+ +s+++++ + + l++GGlP++ + + + ++ +++F KIAA0578 181 AKWVEVKSkrRdMTVF----SGLFVGGLPPelraaalkltlasVREREPF 226 rGCirnlrvngk<-* +G ir++rvn+ KIAA0578 227 KGWIRDVRVNSS 238 SM00181: domain 1 of 3, from 262 to 302: score 15.9, E = 5.7 *->eCa........pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe< +C+ +++++++ C nG G+C ++ C+C G++g+ C KIAA0578 262 PCEageegeggVCLNG-----GVCSvvddQAVCdCSRTGFRGkDCS 302 -* KIAA0578 - - SM00282: domain 2 of 6, from 350 to 484: score 136.0, E = 4e-36 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry ++ +i++sF+T + nGl+l++g+ d++ l+L+ +G + l++ KIAA0578 350 SsDEITLSFKTLQRNGLMLHTGkSADYVNLALK------NGAVSLVI 390 dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggnpv +lGs g+++ ++++ + ++nD+ WH+V+v+rn r+vt+sVDg +++ KIAA0578 391 NLGS----GAFEALVEPV-NGKFNDNAWHDVKVTRNLRQVTISVDGILTT 435 sges....t.LdldkeesgplylGGlPe......lpvspgFrGCirnlrv +g+++++ t L +d + +y+GG P++ + +++pvs++F GC++++++ KIAA0578 436 TGYTqedyTmLGSD----DFFYVGGSPStadlpgSPVSNNFMGCLKEVVY 481 ngk<-* ++ KIAA0578 482 KNN 484 SM00282: domain 3 of 6, from 538 to 690: score 156.1, E = 3.7e-42 *->t.lsisfsFrTtspnGlLlyag...............ggdflaleLv +++sisf+FrTt+pnGl+l+++++++++++ ++++ + df+a+e+ KIAA0578 538 KtGSISFDFRTTEPNGLILFSHgkprhqkdakhpqmiKVDFFAIEML 584 lEDsdgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsvern dG+l+l +d+Gs g++++ + +++nDG+W++V ++r+ KIAA0578 585 ------DGHLYLLLDMGS----GTIKIKALL---KKVNDGEWYHVDFQRD 621 grsvtLsVDggnpvsges....t.LdldkeesgplylGGlPe........ grs+t+sV+ ++++ +++++++ Ldld + lylGGlPe++ + + KIAA0578 622 GRSGTISVN-TLRTPYTApgesEiLDLD----DELYLGGLPEnkaglvfp 666 .....lpvspgFrGCirnlrvngk<-* ++ + + + g++GCir+l+++g+ KIAA0578 667 tevwtALLNYGYVGCIRDLFIDGQ 690 SM00181: domain 2 of 3, from 717 to 751: score 27.3, E = 0.0021 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* +C+++pC n+ G C+++ + y C+C g Gy g++Ce KIAA0578 717 PCLsnPCKNN-----GMCRdgwnRYVCdCSGTGYLGrSCE 751 SM00282: domain 4 of 6, from 776 to 915: score 97.8, E = 1.3e-24 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl +++s++Fr + + G+L+ +++++ d l leL Gr++l KIAA0578 776 EaEDVSLRFRSQRAYGILMATTsrdSADTLRLELD------AGRVKL 816 rydlGsst.....tggparltsdsdrptplnDGqWHrVsverngrsvtLs +++l++++ + ++++gp +l ++ + lnD++WH+V+v+r g+s+ L+ KIAA0578 817 TVNLDCIRincnsSKGPETLFAG----YNLNDNEWHTVRVVRRGKSLKLT 862 VDggnpvsges....t.LdldkeesgplylGGlPe....lpvspgFrGCi VD++ ++g +++t+L+++ ++ G + e++ + v ++F G + KIAA0578 863 VDDQQAMTGQMagdhTrLEFH-----NIETGIITErrylSSVPSNFIGHL 907 rnlrvngk<-* ++l++ng+ KIAA0578 908 QSLTFNGM 915 SM00282: domain 5 of 6, from 963 to 1099: score 130.8, E = 1.5e-34 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr t++++ f+F+Tts +Gl+ly++++g+df+ +eLv G+l+++ KIAA0578 963 TsMHLFFQFKTTSLDGLILYNSgdGNDFIVVELV------KGYLHYV 1003 ydlGssttggparltsdsdrptplnDGqWHrVsvern.grsvtLsVDggn +dlG+ g+ + +s ++plnD+qWH V ++r++ + t+++D + KIAA0578 1004 FDLGN----GANLIKGSS--NKPLNDNQWHNVMISRDtSNLHTVKIDTKI 1047 pvsges..t.LdldkeesgplylGGlPe.........lpvspgFrGCirn +++ +++ ++Ldl+ ++ly+GG+ ++ ++ ++ + +gF+GC+ + KIAA0578 1048 TTQITAgaRnLDLK----SDLYIGGVAKetykslpklVHAKEGFQGCLAS 1093 lrvngk<-* + +ng+ KIAA0578 1094 VDLNGR 1099 SM00181: domain 3 of 3, from 1124 to 1158: score 11.4, E = 25 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C+++ Csn G+C+ ++++C+C ++g+ C KIAA0578 1124 TCQedSCSNQ-----GVCLqqwdGFSCdCSMTSFSGpLCN 1158 SM00282: domain 6 of 6, from 1186 to 1343: score 81.1, E = 1.4e-19 *->t.lsisfsFrTtspnGlLlyag....ggdflaleLvlEDsdgdGrlv + ++ + F T +++++L+ ++++++ gd+l+l+++ +G++ KIAA0578 1186 RaDRLAIGFSTVQKEAVLVRVDsssgLGDYLELHIH------QGKIG 1226 lrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDgg + ++ G ++ a+ +s+ +nDG++H V+++r+g+++tL+VD + KIAA0578 1227 VKFNVGT---DDIAIEESN----AIINDGKYHVVRFTRSGGNATLQVD-S 1268 npvsges....................................t.Ldldk pv ++ + +++++++ +++ + + ++ ++ +++++ t ++++ KIAA0578 1269 WPVIERYpagnndnerlaiarqripyrlgrvvdewlldkgrqlTiFNSQ- 1317 eesgplylGGlPelpvspgFrGCirnlrvngk<-* + + +GG ++F+G +++l++ng KIAA0578 1318 ---ATIIIGGKE---QGQPFQGQLSGLYYNGL 1343 SM00294: domain 1 of 1, from 1487 to 1505: score 37.3, E = 2e-06 *->myrykkRdkGSYhtnEakg<-* my+y++Rd+GSYh++E+++ KIAA0578 1487 MYKYRNRDEGSYHVDESRN 1505 //