hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07103936/chunk_1/iprscan-20080502-07103936.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0583 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 157.2 3.9e-44 4 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 154.3 3e-43 4 PF04822.4.fs Protein of unknown function, DUF622 39.8 5.3e-10 1 PF04822.4.ls Protein of unknown function, DUF622 41.7 2.4e-09 1 PF00625.11.fs Guanylate kinase 28.3 2.7e-07 1 PF00018.18.ls SH3 domain 8.3 0.0025 1 PF07653.7.ls Variant SH3 domain 16.4 0.0075 1 PF00619.12.ls Caspase recruitment domain 15.6 0.01 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00619.12.ls 1/1 39 122 .. 1 89 [] 15.6 0.01 PF04822.4.fs 1/1 160 249 .. 1 92 [] 39.8 5.3e-10 PF04822.4.ls 1/1 160 249 .. 1 92 [] 41.7 2.4e-09 PF00595.14.ls 1/4 655 740 .. 1 86 [] 33.2 8.4e-07 PF00595.14.fs 1/4 655 740 .. 1 86 [] 31.2 4.1e-08 PF00595.14.ls 2/4 752 826 .. 1 86 [] 40.9 4.1e-09 PF00595.14.fs 2/4 755 826 .. 15 86 .] 43.8 1.2e-11 PF00595.14.ls 3/4 1383 1459 .. 1 86 [] 56.3 9.5e-14 PF00595.14.fs 3/4 1383 1459 .. 1 86 [] 54.3 1.3e-14 PF00595.14.fs 4/4 1534 1612 .. 1 86 [] 24.9 2.5e-06 PF00595.14.ls 4/4 1534 1612 .. 1 86 [] 26.9 6.8e-05 PF00018.18.ls 1/1 1629 1692 .. 1 59 [] 8.3 0.0025 PF07653.7.ls 1/1 1630 1692 .. 1 69 [] 16.4 0.0075 PF00625.11.fs 1/1 1834 1873 .. 45 85 .. 28.3 2.7e-07 Alignments of top-scoring domains: PF00619.12.ls: domain 1 of 1, from 39 to 122: score 15.6, E = 0.01 *->rellrknRvaLvrrlgketldglLDyLleknVLteeeyEeIkaantt rell ++ L + ++ ++ +L L +++ L+ e + ++ KIAA0583 39 RELLAQCQQSLAQAMT--EVEAVLGLLEAAGALSPGERRQLDE-EAG 82 rrdkareLldlvqkkGpeafqiFleaLretgqphLadllels<-* ka+ Ll+l++ k + fq ++ aL++ +qphL + l l KIAA0583 83 GA-KAELLLKLLLAKERDHFQDLRAALEK-TQPHLLPILYLN 122 PF04822.4.fs: domain 1 of 1, from 160 to 249: score 39.8, E = 5.3e-10 *->hRkTSsqvpniskkefkkerlEeLktelqlItqerneLrdiLikyme +k+ s+ p ++ + + E L l+l t erneLr +L+ + KIAA0583 160 TGKAPSPPPLLTDRQVNEK-VENLSIQLRLMTRERNELRKRLAFATH 205 g...sLNKRsrpfyRmNteyeeLKlqheklMtdlhkleqsIseareki<- g+ + KR p++R+N+ ye LK q + M+dl l a++++ KIAA0583 206 GtafD--KR--PYHRLNPDYERLKIQCVRAMSDLQSLQNQHTNALKRC 249 * KIAA0583 - - PF04822.4.ls: domain 1 of 1, from 160 to 249: score 41.7, E = 2.4e-09 *->hRkTSsqvpniskkefkkerlEeLktelqlItqerneLrdiLikyme +k+ s+ p ++ + + E L l+l t erneLr +L+ + KIAA0583 160 TGKAPSPPPLLTDRQVNEK-VENLSIQLRLMTRERNELRKRLAFATH 205 g...sLNKRsrpfyRmNteyeeLKlqheklMtdlhkleqsIseareki<- g+ + KR p++R+N+ ye LK q + M+dl l a++++ KIAA0583 206 GtafD--KR--PYHRLNPDYERLKIQCVRAMSDLQSLQNQHTNALKRC 249 * KIAA0583 - - PF00595.14.ls: domain 1 of 4, from 655 to 740: score 33.2, E = 8.4e-07 *->evtleke.dkrgglGfsikggsdkga...dkgifvsevlpGsgaAea e e e+ lGf ++g +++ ++d gifv++v +G + A+ KIAA0583 655 EFERETEdIDLKALGFDMAEGVNEPCfpgDCGIFVTKVDKG-SIADG 700 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L+++D +l++N++dl n +a++al + g + ++v+ KIAA0583 701 R--LRVNDWLLRINDVDLINKDKKQAIKALLNGEG-AINMVVR 740 PF00595.14.fs: domain 1 of 4, from 655 to 740: score 31.2, E = 4.1e-08 *->evtleke.dkrgglGfsikggsdkga...dkgifvsevlpGsgaAea e e e+ lGf ++g +++ ++d gifv++v +G + A+ KIAA0583 655 EFERETEdIDLKALGFDMAEGVNEPCfpgDCGIFVTKVDKG-SIADG 700 gGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L+++D +l++N++dl n +a++al + g + ++v+ KIAA0583 701 R--LRVNDWLLRINDVDLINKDKKQAIKALLNGEG-AINMVVR 740 PF00595.14.ls: domain 2 of 4, from 752 to 826: score 40.9, E = 4.1e-09 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL +++ + ++ G+s+ +g++ + vlpGs+aA+ g+ L KIAA0583 752 PLHINLS-GQKDSGISLE--------NGVYAAAVLPGSPAAKEGS-L 788 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +GD+I+++NG l n s+ e+ +l+++ + ++tL +l KIAA0583 789 AVGDRIVAINGIALDNKSLNECESLLRSCQD-SLTLSLL 826 PF00595.14.fs: domain 2 of 4, from 755 to 826: score 43.8, E = 1.2e-11 *->fsikggsdkga..dkgifvsevlpGsgaAeagGrLqaGDqIlsvNGq ++++g++d g + ++g++ + vlpGs+aA+ g+ L +GD+I+++NG KIAA0583 755 INLSGQKDSGIslENGVYAAAVLPGSPAAKEGS-LAVGDRIVAINGI 800 dlenlsheeavlalkgsggsevtLtvl<-* l n s+ e+ +l+++ + ++tL +l KIAA0583 801 ALDNKSLNECESLLRSCQD-SLTLSLL 826 PF00595.14.ls: domain 3 of 4, from 1383 to 1459: score 56.3, E = 9.5e-14 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v+++k + ++lG+si++g+++ gi+vs+v G + A+++G L KIAA0583 1383 HVKVQK--GSEPLGISIVSGEKG----GIYVSKVTVG-SIAHQAG-L 1421 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + GDq+l+ NG +l++ ++ +a l++ + ++ ++t++ + KIAA0583 1422 EYGDQLLEFNGINLRSATEQQARLIIGQQCD-TITILAQ 1459 PF00595.14.fs: domain 3 of 4, from 1383 to 1459: score 54.3, E = 1.3e-14 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v+++k + ++lG+si++g+++ gi+vs+v G + A+++G L KIAA0583 1383 HVKVQK--GSEPLGISIVSGEKG----GIYVSKVTVG-SIAHQAG-L 1421 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + GDq+l+ NG +l++ ++ +a l++ + ++ ++t++ + KIAA0583 1422 EYGDQLLEFNGINLRSATEQQARLIIGQQCD-TITILAQ 1459 PF00595.14.fs: domain 4 of 4, from 1534 to 1612: score 24.9, E = 2.5e-06 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v++ k ++ lG+ + gg+ + g+fv+ev + ++A+ L KIAA0583 1534 RVVFIKK-SQLELGVHLCGGNLH----GVFVAEVEDD-SPAKGPDGL 1574 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +GD Il+ + d++n ++ee+ ++ ++++ v+L+v+ KIAA0583 1575 VPGDLILEYGSLDVRNKTVEEVYVEMLKPRD-GVRLKVQ 1612 PF00595.14.ls: domain 4 of 4, from 1534 to 1612: score 26.9, E = 6.8e-05 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v++ k ++ lG+ + gg+ + g+fv+ev + ++A+ L KIAA0583 1534 RVVFIKK-SQLELGVHLCGGNLH----GVFVAEVEDD-SPAKGPDGL 1574 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* +GD Il+ + d++n ++ee+ ++ ++++ v+L+v+ KIAA0583 1575 VPGDLILEYGSLDVRNKTVEEVYVEMLKPRD-GVRLKVQ 1612 PF00018.18.ls: domain 1 of 1, from 1629 to 1692: score 8.3, E = 0.0025 *->kkvvALYDYearesdELsFkkGDvitvleksdd...pgWWkgrlkgt + +ALYD a ++ELsFkk D+++v + + ++ + W +l+ KIAA0583 1629 FYIRALYDRLADVEQELSFKKDDILYVDDTLPQgtfGSWMAWQLDE- 1674 gG....keGliPsNYVepv<-* + ++ ++G iPs YV + KIAA0583 1675 -NaqkiQRGQIPSKYVMDQ 1692 PF07653.7.ls: domain 1 of 1, from 1630 to 1692: score 16.4, E = 0.0075 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.... y+ra+ d a ++e Ls+kk+d+++V + ++++ KIAA0583 1630 YIRALYDRLA-DVEQE------LSFKKDDILYV-----DDTLPqgtf 1664 gwweg.eslggGrr.r.RGlvPssaveel<-* g+w + + +++ + +RG +Ps++v + KIAA0583 1665 GSWMAwQL-DENAQkIqRGQIPSKYVMDQ 1692 PF00625.11.fs: domain 1 of 1, from 1834 to 1873: score 28.3, E = 2.7e-07 *->TskeaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFI<-* T++++++++ +++++c+LD+ p ++ +l + + P+++FI KIAA0583 1834 TTVASIKEITEKNRHCLLDIAPHAIERLHHMHIY-PIVIFI 1873 //