# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj02755.fasta.huge -Q ../query/KIAA0590.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0590, 1468 aa vs ./tmplib.23663 library 1986037 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 3.5830+/-0.00552; mu= 27.2680+/- 0.377 mean_var=111.6755+/-26.291, 0's: 0 Z-trim: 6 B-trim: 0 in 0/40 Lambda= 0.121366 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1179 ( 1090 res) hh05402a (1090) 185 44.7 0.00012 KIAA1638 ( 905 res) fj04819s1 ( 905) 152 38.7 0.0059 >>KIAA1179 ( 1090 res) hh05402a (1090 aa) initn: 146 init1: 80 opt: 185 Z-score: 175.5 bits: 44.7 E(): 0.00012 Smith-Waterman score: 226; 23.060% identity (50.862% similar) in 464 aa overlap (801-1237:192-646) 780 790 800 810 820 KIAA05 LEDCDKATRDAMLHFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVA---- ....: : .: . :. ..::.: KIAA11 KIHNPQKALECYRKGNAFMKAVELARLAFPVEVVKLEEAWGDH---LVQQKQLDAAINHY 170 180 190 200 210 830 840 850 860 870 KIAA05 ---KVCLGNMGHARGARALREAEQEPELEAR---------VAVLATQLGMLEDAEQLYRK . . . : ::: ..: .:. : :: ..: : ::.:: : KIAA11 IEARCSIKAIEAALGARQWKKAIYILDLQDRNTASKYYPLVAQHYASLQEYEIAEELYTK 220 230 240 250 260 270 880 890 900 910 920 930 KIAA05 CKRHDLLNKFYQAAGRWQEALQVAEHHDRVHLRST-YHRYAGHLEASADCSRALSYYEKS : .: ::::..: ..: . : . :. : : ..: .. .: : KIAA11 GDRTKDAIDMYTQAGRWEQAHKLAMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTV 280 290 300 310 320 330 940 950 960 970 980 KIAA05 DTHRFEVPRM----LSEDLPSL--ELYVNKMKDKTLWRWWAQYLESQGEMDAALHYYELA . . . . : .:. : . . . ..: : .. ::..:... : ..: : KIAA11 QEPDLAITMYKKHKLYDDMIRLVGKHHPDLLSDTHLH--LGKELEAEGRLQEAEYHYLEA 340 350 360 370 380 390 990 1000 1010 1020 1030 1040 KIAA05 RDHFSLVRIHCFQGNVQKAAQIANETGNLAASYHLARQYESQEEVGQAVHFYTRAQAFKN .. . : .. .: ..: ..: :. : :.: . .. ::.. .. .. KIAA11 QEWKATVNMYRASGLWEEAYRVARTQGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEA 400 410 420 430 440 450 1050 1060 1070 1080 1090 1100 KIAA05 AIRLCKENGLDD---QLMNLALL-SSPEDMIEVARYYEEKGVQMDRAVMLYHKAGHFSKA :. .: . .: ::: ..:: .. : . :..: ....: . .::. ..: KIAA11 AVDHAADNCSFEFAFELSRLALKHKTPEVHLKYAMFLEDEG-KFEEAEAEFIRAGKPKEA 460 470 480 490 500 510 1110 1120 1130 1140 1150 1160 KIAA05 LELAFATQQFVALQLIAEDLDETSDPALLARCSDFFIEHSQYERAVELLLAARKYQEALQ . . .:.. : : .:: : : .:. . .:......: ::: :.. ::. KIAA11 VLMFVHNQDWEAAQRVAEAHDPDSVAEVLVGQARGALEEKDFQKAEGLLLRAQRPGLALN 520 530 540 550 560 570 1170 1180 1190 1200 1210 1220 KIAA05 LCLGQNMSITEEMAEKMTVAKDSSDLPEESRRELLEQIADCCMRQGSYHLATKKYTQAGN .. : : .. : :: .:: .. : .: . : ... :::. KIAA11 YYKEAGLWSDALRICKDYVPSQLEALQEEYEREATKKGARGV--EGFVEQA-RHWEQAGE 580 590 600 610 620 630 1230 1240 1250 1260 1270 1280 KIAA05 KLKAMRALLKSGDTEKITFFASVSRQKEIYIMAANYLQSLDWRKEPEIMKNIIGFYTKGR .:. :: :. KIAA11 YSRAVDCYLKVRDSGNSGLAEKCWMKAAELSIKFLPPQRNMEVVLAVGPQLIGIGKHSAA 640 650 660 670 680 690 >>KIAA1638 ( 905 res) fj04819s1 (905 aa) initn: 144 init1: 85 opt: 152 Z-score: 144.9 bits: 38.7 E(): 0.0059 Smith-Waterman score: 224; 22.320% identity (51.670% similar) in 569 aa overlap (796-1350:330-831) 770 780 790 800 810 820 KIAA05 RDFVGLEDCDKATRDAMLHFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDV .:.. .....::.:...:: :.. .... KIAA16 THGFLSNLKDTGPDELRPMLAQNLMLKRFSDAWEMCRILNDEAAWNELARACLHHMEVEF 300 310 320 330 340 350 830 840 850 860 870 880 KIAA05 A-KVC--LGNMGHARGARALREAEQEPELEARVAVLATQLGMLEDAEQLYRKCKRHDLLN : .: .::.: . . . .. :. : ...:..... .. .: : .: : KIAA16 AIRVYRRIGNVGIVMSLEQIKGIEDYNLLAGHLAMFTNDYNLAQDL-YLASSCPIAAL-- 360 370 380 390 400 410 890 900 910 920 930 940 KIAA05 KFYQAAGRWQEALQVAEH--HDRVHLRSTYHRYAGHLEASADCSRALSYYEKSDTHRFEV .. . .:. :::.:.: :.. . : ..:: .:: ..: ::..:::. KIAA16 EMRRDLQHWDSALQLAKHLAPDQIPFIS--KEYAIQLEFAGDYVNALAHYEKG------- 420 430 440 450 460 950 960 970 980 990 KIAA05 PRMLSEDLPSLELYVNKMKDKTLWRWWAQYLESQGEMDAALHYYELARDHFSLV-RIHCF .. : :: .:.. ::. .:.. ... : : : : . : KIAA16 ---ITGD--------NKEHDEACLAGVAQMSIRMGDIRRGVNQ---ALKHPSRVLKRDC- 470 480 490 500 510 1000 1010 1020 1030 1040 1050 KIAA05 QGNVQKAAQIANETGNLAASYHLARQYESQEEVGQAVHFYTRAQAFKNAIRLCKENGLDD : . . . .:...: ::. .:. : :.. . .. : KIAA16 -GAILENMKQFSEAAQL---------YEKGLYYDKAASVYIRSKNWAKVGDL-------- 520 530 540 550 1060 1070 1080 1090 1100 1110 KIAA05 QLMNLALLSSPEDMIEVARYYEEKGVQMDRAVMLYHKAGHFSKALE--LAFATQQFVALQ : .:::. .. :. : : .. .::. :..: ....... : .. :.. KIAA16 ----LPHVSSPKIHLQYAKAKEADG-RYKEAVVAYENAKQWQSVIRIYLDHLNNPEKAVN 560 570 580 590 600 1120 1130 1140 1150 1160 1170 KIAA05 LIAEDLDETSDPA-LLARCSDFFIEHSQYERAVELLLAARKYQEALQLCLGQNMSITEEM .. : .. : : ..:: ::.. ..: :...:. .. .::. : .: KIAA16 IVRE--TQSLDGAKMVAR---FFLQLGDYGSAIQFLVMSKCNNEAFTLAQQHN------- 610 620 630 640 650 1180 1190 1200 1210 1220 1230 KIAA05 AEKMTVAKDSSDLPEESRRELLEQIADCCMRQGSYHLATKKYTQAGNKLKAMRALLK--- :: . : :.. : ..:: . : : : . :. .:.. .:: KIAA16 --KMEIYADIIG-SEDTTNEDYQSIALYFEGEKRYLQAGKFFLLCGQYSRALKHFLKCPS 660 670 680 690 700 710 1240 1250 1260 1270 1280 1290 KIAA05 SGDTEKITFFASVSRQKEIYIMAANYLQSLDWRKE--PEIMKNIIGFYTKGRALDLLAGF : :. : . . : . ... . .. : ... :. : .. .: . : KIAA16 SEDNVAIEMAIETVGQAKDELLTNQLIDHLLGENDGMPKDAKYLFRLYMALKQYREAAQT 720 730 740 750 760 770 1300 1310 1320 1330 1340 1350 KIAA05 YDACAQVEIDEYQNYDKAHGALTEAYKCLAKAKAKSPLDQETRLAQLQSRMALVKRFIQA :. : . :: .:: .: : : . : : : .. : : :.: . ::: .. KIAA16 AIIIAREE-QSAGNYRNAHDVLFSMYAELKSQKIKIPSEMATNLMILHSYI-LVKIHVKN 780 790 800 810 820 830 1360 1370 1380 1390 1400 1410 KIAA05 RRTYTEDPKESIKQCELLLEEPDLDSTIRIGDVYGFLVEHYVRKEEYQTAYRFLEEMRRR KIAA16 GDHMKGARMLIRVANNISKFPSHIVPILTSTVIECHRAGLKNSAFSFAAMLMRPEYRSKI 840 850 860 870 880 890 1468 residues in 1 query sequences 1986037 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:08:15 2008 done: Thu Dec 18 15:08:16 2008 Total Scan time: 0.830 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]