hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07255054/chunk_1/iprscan-20080502-07255054.nocrc
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Query sequence: KIAA0590
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07719.7.ls Tetratricopeptide repeat                        35.5    1.7e-07   5
PF07719.7.fs Tetratricopeptide repeat                        28.6    5.6e-07   5
PF00400.22.fs WD domain, G-beta repeat                        24.8      5e-06   2
PF00400.22.ls WD domain, G-beta repeat                        28.8    1.8e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   2/2      99   137 ..     1    38 []    20.8  6.9e-05
PF00400.22.ls   2/2      99   137 ..     1    38 []    22.8   0.0012

Alignments of top-scoring domains:
PF00400.22.fs: domain 2 of 2, from 99 to 137: score 20.8, E = 6.9e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +e+ +    Ht+ +t +++sp+ g++l+sg r g + +W    
    KIAA0590    99    KEQHtMPlTHTADITVLRWSPS-GNCLLSGDRLGVLLLWR    137  

PF00400.22.ls: domain 2 of 2, from 99 to 137: score 22.8, E = 0.0012
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +e+ +    Ht+ +t +++sp+ g++l+sg r g + +W    
    KIAA0590    99    KEQHtMPlTHTADITVLRWSPS-GNCLLSGDRLGVLLLWR    137  

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