hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07255054/chunk_1/iprscan-20080502-07255054.nocrc
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Query sequence: KIAA0590
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  33.3    3.4e-05   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/3      61    95 ..     1    46 []     5.0       79
SM00320    2/3      97   137 ..     1    46 []    26.8   0.0031
SM00320    3/3     320   358 ..     1    46 []     1.5  2.9e+02

Alignments of top-scoring domains:
SM00320: domain 1 of 3, from 61 to 95: score 5.0, E = 79
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++ + r ++       V s++++p+        +la+g + g + ++
    KIAA0590    61    DtHVERPFR-------VASLCWHPTR------LVLAVGWeTGEVTVF 94   

                   d<-*
                   +   
    KIAA0590    95 N    95   

SM00320: domain 2 of 3, from 97 to 137: score 26.8, E = 0.0031
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      ++k  +t++  Ht+  ++t +++sp+g      n+l+sg++ g + l
    KIAA0590    97    QdKEQHTMPlTHTA--DITVLRWSPSG------NCLLSGDrLGVLLL 135  

                   Wd<-*
                   W    
    KIAA0590   136 WR    137  

SM00320: domain 3 of 3, from 320 to 358: score 1.5, E = 2.9e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++   + ++        ++v+++          lla+g + g + +W
    KIAA0590   320    SpDEKFGFE-KGE--NMNCVCYCKVK------GLLAAGTdRGRVAMW 357  

                   d<-*
                       
    KIAA0590   358 R    358  

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