hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-07355663/chunk_1/iprscan-20080502-07355663.nocrc
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Query sequence: KIAA0596
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       210.3    4.2e-60  12
PF00400.22.fs WD domain, G-beta repeat                       207.7    2.5e-59  12

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/12     97   125 ..     1    28 [.    16.0   0.0015
PF00400.22.fs   2/12    141   170 ..     1    29 [.    14.2   0.0049
PF00400.22.fs   3/12    184   221 ..     1    38 []    15.0    0.003
PF00400.22.fs   4/12    302   323 ..    14    38 .]    19.5  0.00016
PF00400.22.fs   5/12    366   389 ..    14    38 .]    11.2    0.035
PF00400.22.ls   6/12    397   444 ..     1    38 []    23.8  0.00057
PF00400.22.fs   6/12    405   444 ..     8    38 .]    22.1  2.9e-05
PF00400.22.fs   7/12    486   524 ..     1    38 []    19.6  0.00015
PF00400.22.ls   7/12    486   524 ..     1    38 []    21.5   0.0027
PF00400.22.fs   8/12    528   569 ..     1    38 []    18.8  0.00025
PF00400.22.fs   9/12    574   614 ..     1    38 []    16.9  0.00087
PF00400.22.fs  11/12    668   706 ..     1    38 []    14.2   0.0048
PF00400.22.fs  12/12    710   748 ..     1    38 []    36.6  2.4e-09
PF00400.22.ls  12/12    710   748 ..     1    38 []    38.6    2e-08

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 12, from 97 to 125: score 16.0, E = 0.0015
                   *->geck.vl.gHtstVtcvafspdsgpllasg<-*
                       ++ ++l+   +t+t++afspd g++l++g   
    KIAA0596    97    HKQHhILnSSRKTITALAFSPD-GKYLVTG    125  

PF00400.22.fs: domain 2 of 12, from 141 to 170: score 14.2, E = 0.0049
                   *->geck.vl.gHtstVtcvafspdsgpllasgS<-*
                        ++ +l+ H+ +V cvafsp+  ++++s +   
    KIAA0596   141    HSQVaELqEHKYGVACVAFSPS-AKYIVSVG    170  

PF00400.22.fs: domain 3 of 12, from 184 to 221: score 15.0, E = 0.003
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ +   +  +s Vt+v+fs d ++++++++  ++ik W    
    KIAA0596   184    KNIVvASnKVSSRVTAVSFSED-CSYFVTAGN-RHIKFWY    221  

PF00400.22.fs: domain 4 of 12, from 302 to 323: score 19.5, E = 0.00016
                   *->cvafspdsgpllasgSrDgtikiWd<-*
                      c+++s+d   ++++g++Dgt+++++   
    KIAA0596   302    CISVSQD---YIFCGCADGTVRLFN    323  

PF00400.22.fs: domain 5 of 12, from 366 to 389: score 11.2, E = 0.035
                   *->cvafspdsgpllasgSrDgtikiWd<-*
                      ++ f+p   ++l +   D++i++Wd   
    KIAA0596   366    ALTFDPT-NQWLSCVYNDHSIYVWD    389  

PF00400.22.ls: domain 6 of 12, from 397 to 444: score 23.8, E = 0.00057
                   *->geck.vl.gHtstVtcvafspd.........sgpllasgSrDgtiki
                      g++ + l++  s V++v + p+ ++++ +   ++ ++++S+D+ti++
    KIAA0596   397    GKVYsALyHS-SCVWSVEVYPEvkdsnqaclPPSSFITCSSDNTIRL 442  

                   Wd<-*
                   W+   
    KIAA0596   443 WN    444  

PF00400.22.fs: domain 6 of 12, from 405 to 444: score 22.1, E = 2.9e-05
                   *->HtstVtcvafspd.........sgpllasgSrDgtikiWd<-*
                      H+s V++v + p+ ++++ +   ++ ++++S+D+ti++W+   
    KIAA0596   405    HSSCVWSVEVYPEvkdsnqaclPPSSFITCSSDNTIRLWN    444  

PF00400.22.fs: domain 7 of 12, from 486 to 524: score 19.6, E = 0.00015
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +   +l +   ++++v++sp+ g++lasg r gt+++ +   
    KIAA0596   486    DKADaSLlDPRVGIRSVCVSPN-GQHLASGDRMGTLRVHE    524  

PF00400.22.ls: domain 7 of 12, from 486 to 524: score 21.5, E = 0.0027
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +   +l +   ++++v++sp+ g++lasg r gt+++ +   
    KIAA0596   486    DKADaSLlDPRVGIRSVCVSPN-GQHLASGDRMGTLRVHE    524  

PF00400.22.fs: domain 8 of 12, from 528 to 569: score 18.8, E = 0.00025
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgtikiWd<-*
                             ++H s + c+ +s ++++ +llas+SrD+ i++ d   
    KIAA0596   528    LSEMlKVeAHDSEILCLEYSKPdtGLKLLASASRDRLIHVLD    569  

PF00400.22.fs: domain 9 of 12, from 574 to 614: score 16.9, E = 0.00087
                   *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-*
                        ++++l+ H+s++t+v+f+ ++++ +++s+++D++i+      
    KIAA0596   574    YSLQqTLdEHSSSITAVKFAASdGQVRMISCGADKSIYFRT    614  

PF00400.22.fs: domain 11 of 12, from 668 to 706: score 14.2, E = 0.0048
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++ +  +g  +t   v  +p+ g ++a++++D+++ i+d   
    KIAA0596   668    KKLFkGSqGEDGTLIKVQTDPS-GIYIATSCSDKNLSIFD    706  

PF00400.22.fs: domain 12 of 12, from 710 to 748: score 36.6, E = 2.4e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      gec+ +  gH+  Vt ++fs d +++l+s S D +i +W    
    KIAA0596   710    GECVaTMfGHSEIVTGMKFSND-CKHLISVSGDSCIFVWR    748  

PF00400.22.ls: domain 12 of 12, from 710 to 748: score 38.6, E = 2e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      gec+ +  gH+  Vt ++fs d +++l+s S D +i +W    
    KIAA0596   710    GECVaTMfGHSEIVTGMKFSND-CKHLISVSGDSCIFVWR    748  

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