hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-07355663/chunk_1/iprscan-20080502-07355663.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0596 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00320 250.1 1.8e-70 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00320 1/12 96 137 .. 1 46 [] 31.1 0.00016 SM00320 2/12 140 181 .. 1 46 [] 22.3 0.066 SM00320 3/12 184 221 .. 1 46 [] 17.6 0.79 SM00320 4/12 285 323 .. 1 46 [] 16.0 1.4 SM00320 5/12 354 389 .. 1 46 [] 12.7 4.8 SM00320 6/12 396 444 .. 1 46 [] 25.0 0.01 SM00320 7/12 485 524 .. 1 46 [] 21.6 0.11 SM00320 8/12 527 569 .. 1 46 [] 19.0 0.48 SM00320 9/12 573 614 .. 1 46 [] 19.1 0.47 SM00320 10/12 621 661 .. 1 46 [] 7.0 39 SM00320 11/12 664 706 .. 1 46 [] 17.0 1 SM00320 12/12 709 748 .. 1 46 [] 41.6 1e-07 Alignments of top-scoring domains: SM00320: domain 1 of 12, from 96 to 137: score 31.1, E = 0.00016 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.Dgt..ir ++k+ ++l+ ++ +t++afspdg ++l++g + + + +r KIAA0596 96 KhKQHHILNSSRK--TITALAFSPDG------KYLVTGEsGHMpaVR 134 lWd<-* +Wd KIAA0596 135 VWD 137 SM00320: domain 2 of 12, from 140 to 181: score 22.3, E = 0.066 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs...Dgtir +++++++l+ H+ +V +vafsp+ ++++s + ++D + KIAA0596 140 EhSQVAELQEHKY--GVACVAFSPSA------KYIVSVGyqhDMIVN 178 lWd<-* +W KIAA0596 179 VWA 181 SM00320: domain 3 of 12, from 184 to 221: score 17.6, E = 0.79 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd ++ ++++ k ++ +Vt+v+fs d ++++++++++i++W KIAA0596 184 KnIVVASNK-VSS--RVTAVSFSEDC------SYFVTAGNRHIKFWY 221 <-* KIAA0596 - - SM00320: domain 4 of 12, from 285 to 323: score 16.0, E = 1.4 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ lr ++ t + +++++s+d ++++g+ Dgt+rl+ KIAA0596 285 KwVELRNIDSFTT-TVAHCISVSQD--------YIFCGCaDGTVRLF 322 d<-* + KIAA0596 323 N 323 SM00320: domain 5 of 12, from 354 to 389: score 12.7, E = 4.8 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ + ++ + +++f+p++ ++l + +D++i++W KIAA0596 354 SgVANARYP------DTIALTFDPTN------QWLSCVYnDHSIYVW 388 d<-* d KIAA0596 389 D 389 SM00320: domain 6 of 12, from 396 to 444: score 25.0, E = 0.01 *->t.kllrtlkgHtgespVtsvafspdggss....dspnllasgs.Dgt +k+ + l H++ V+sv + p ++s++ +p+ ++++s+D+t KIAA0596 396 VgKVYSALY-HSS--CVWSVEVYPEVKDSnqacLPPSSFITCSsDNT 439 irlWd<-* irlW+ KIAA0596 440 IRLWN 444 SM00320: domain 7 of 12, from 485 to 524: score 21.6, E = 0.11 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW +k ++l + +++sv++sp+g ++lasg++ gt+r+ KIAA0596 485 GdKADASLLDPRV--GIRSVCVSPNG------QHLASGDrMGTLRVH 523 d<-* + KIAA0596 524 E 524 SM00320: domain 8 of 12, from 527 to 569: score 19.0, E = 0.48 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + + + ++H++ +++++ +s + + +llas+s+D+ i++ KIAA0596 527 SlSEMLKVEAHDS--EILCLEYSKPDTG---LKLLASASrDRLIHVL 568 d<-* d KIAA0596 569 D 569 SM00320: domain 9 of 12, from 573 to 614: score 19.1, E = 0.47 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + +l +tl+ H++ ++t+v+f ++ + +++s++ D++i++ KIAA0596 573 EySLQQTLDEHSS--SITAVKFAASD----GQVRMISCGaDKSIYFR 613 d<-* KIAA0596 614 T 614 SM00320: domain 10 of 12, from 621 to 661: score 7.0, E = 39 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW + +rt + ++ + +++++ p+ ++ a g++D++ir++ KIAA0596 621 GvQFTRTHHVVRK-TTLYDMDVEPSW------KYTAIGCqDRNIRIF 660 d<-* + KIAA0596 661 N 661 SM00320: domain 11 of 12, from 664 to 706: score 17.0, E = 1 *->t.kllrtlkgHtge.spVtsvafspdggssdspnllasgs.Dgtirl ++k+ + +kg +ge++ v+ +p+g ++a++++D+++ + KIAA0596 664 SgKQKKLFKGSQGEdGTLIKVQTDPSG------IYIATSCsDKNLSI 704 Wd<-* +d KIAA0596 705 FD 706 SM00320: domain 12 of 12, from 709 to 748: score 41.6, E = 1e-07 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++++++t+ gH+ Vt+++fs d ++l+s s+D++i +W KIAA0596 709 SgECVATMFGHSE--IVTGMKFSNDC------KHLISVSgDSCIFVW 747 d<-* KIAA0596 748 R 748 //